Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam...    29   3.2  
At4g27710.1 68417.m03983 cytochrome P450 family protein contains...    28   5.6  
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ...    28   5.6  
At1g21480.1 68414.m02685 exostosin family protein contains Pfam ...    28   5.6  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   7.3  
At5g64850.1 68418.m08158 expressed protein                             27   9.7  
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ...    27   9.7  

>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 807

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 141 RSKVNVSRFKLRREKYRCTFS--FRRAVTVLLYYALWFILITSIAFPTVQEN 290
           R  +N+ R +++REK+R TFS  F       L  AL  I+ T    P  + N
Sbjct: 382 RKGMNILRPQMKREKHRVTFSTGFSAGCIFSLIVALVAIIRTRKTMPEAEHN 433


>At4g27710.1 68417.m03983 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 518

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 601 FYYCLDGWTSLRPTWC*MVTGAHRHLQRKCR 509
           FYY   G TS+  TW  M+   H+  Q K R
Sbjct: 323 FYYAGQGTTSILLTWTTMLLSLHQGWQEKLR 353


>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 410

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 541 GAHRHLQRKC-RTHLVYIYSIVGSGLALPLALLTSMSESNHLPPVVDIYR 395
           GA+ H    C RTH +    +V S   +        SESN + PV+D+ R
Sbjct: 13  GAYSHYATPCTRTHQIGALFLVVSTFFVTRLFDQWFSESNSVTPVIDLRR 62


>At1g21480.1 68414.m02685 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 462

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 541 GAHRHLQRKC-RTHLVYIYSIVGSGLALPLALLTSMSESNHLPPVVDIYR 395
           GA+ H    C RTH +    +V S   +        SESN + PV+D+ R
Sbjct: 13  GAYSHYATPCTRTHQIGALFLVVSTFFVTRLFDQWFSESNSVTPVIDLRR 62


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 304 NLLEAVTSIRMVILNTYLLIKCLFSMHLNT--FCICLQLVVSGYFRSWTSTTPEAEPNRC 477
           +LL  V S+      TY+ ++C+F  H +   F   +++    +  S+TS+ P  + + C
Sbjct: 250 SLLCDVCSLIKEAFPTYVCLRCIFVAHRDCIYFPYVIKICRHQHRISFTSSLPSGKWS-C 308

Query: 478 LLYYKYIQGGCGIYVAD 528
            +  K +   CG Y  +
Sbjct: 309 GVCRKKVDNNCGAYTCN 325


>At5g64850.1 68418.m08158 expressed protein
          Length = 114

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 574 SSTHLSNNKKNTIN*LHRKTNFVTRRIFLC*MCC 675
           ++ H  NN +N  +  H  +    RRIF C  CC
Sbjct: 78  TTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCC 111


>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
           WD-40 repeats (PF0400); identical to WD-40 repeat
           protein (SP:O22467) [Arabidopsis thaliana]
          Length = 424

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 298 FRSFSCTVGNAILVIKINHNA*YNNTVTALRNEKVHRYFSRRSLNLETFTFDRRK 134
           F  F C  G   ++ +INH+   N      +N  +    + +++N E + FD  K
Sbjct: 106 FGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFI---IATKTVNAEVYVFDYSK 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,597
Number of Sequences: 28952
Number of extensions: 317935
Number of successful extensions: 563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)