Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00454
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   2.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   3.8  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   3.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.6  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   8.7  

>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 629 SPTPRITLRCADPHAFFICCISLNSVSHSPVKTKLLSI 516
           +P+ RIT+     H F + C SL+S+  +   T  LSI
Sbjct: 242 NPSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSI 279


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  TIDDMPLDNTFINKSNVDSQVKSILYNNVVSPKDERAWLMK 201
           T++  P+D T +    VDS  +S     +V  K+ R W +K
Sbjct: 180 TVNWDPVDCTVLANEQVDSHGRSWRSGAIVEKKNLRQWFLK 220


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 233 ESVVKSIRVIAFISHALSSLGDTTLLYNIDFT-*ESTLLLFINVLSKGISSIVSKIARTI 57
           E  + +IR++ F+S +  +LGDT L Y    T    +L + ++      + +  K     
Sbjct: 248 ELSLDAIRIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKCKNFSNDLSDKYQNIR 307

Query: 56  SWISKLLLKFYFLNCV 9
            W+S    + Y+  CV
Sbjct: 308 LWVSVWQWEGYWSFCV 323


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 398 KKH-TSGCSGYRISVWFVSSPNE--IRRDSNDR-RYGATEIMW 514
           K H   GC+   I VW +S+PN   I R   DR R G   ++W
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIW 209


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -2

Query: 251 DDVSSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLSKGISSIVSK 72
           +D + P  VV     + + S AL    + + L  +D        L + +L + +  +   
Sbjct: 591 EDTTFPMRVVNY--ALEYSSKALDKFAENSHLILLDMVDVGKPDLVLTLLCRWLHMVHLY 648

Query: 71  IART--ISWISKLLLKFYFLNCVS 6
            +RT   SWI  +  KFYF++ ++
Sbjct: 649 SSRTSITSWIYSIASKFYFIDSLN 672


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 49   IHEMVRAIFETIDDMPLDNTFINKSNVDSQVKSI-----LYNNVVSPKDERAWLMKAITL 213
            +H++++A+F  + D P D   +  + V S +  I     +  +V++PK+    ++ A + 
Sbjct: 1194 LHDILKALFFILKDTPTDYGVLKLTEVRSFIVDITTQFCILQDVLAPKERANNIINAFSP 1253

Query: 214  IDLTTLSGDD 243
              L  L  +D
Sbjct: 1254 FFLELLHPND 1263


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 55  EMVRAIFETIDDMPLDNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLS 234
           + ++ I  TI  +PL+   +  +   S +++IL N    P D + +L +  T+  L  L+
Sbjct: 235 DSLQQIVPTIPHLPLNLVQLKITPEISAIRTILINKNTHPDDLQFFLSRIGTM--LMNLA 292

Query: 235 GD 240
           GD
Sbjct: 293 GD 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,173
Number of Sequences: 5004
Number of extensions: 65969
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)