Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00454
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    29   3.9  
08_02_1494 + 27523016-27524040,27524971-27525118                       28   6.9  
04_01_0277 + 3681869-3681922,3681946-3682004,3683011-3683631,368...    28   6.9  
01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982     28   6.9  
07_03_1464 + 26726527-26727552                                         28   9.1  
03_02_0151 + 5947177-5947322,5947461-5947607,5947707-5947931,594...    28   9.1  

>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = -2

Query: 401 FFQLHSLQSSTYIRHLCRVDTDSCSVKXXXXXXXXXXXXICSLPTKSSNFDDVSSPESVV 222
           FF      S+  I  L R+DT    VK               L   S + +DV S   + 
Sbjct: 177 FFNQAEGSSAESITALARIDT----VKQRMEAAYATLQDAAGLAQLSQSVEDVFSSGDLP 232

Query: 221 KSIRVIAFISHALSSLGDTTLLYNI 147
           K+   +A + H LS++G+     N+
Sbjct: 233 KAAETLATMRHCLSAVGEVAEFANV 257


>08_02_1494 + 27523016-27524040,27524971-27525118
          Length = 390

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 626 PTPRITLRCADPHAFFICCISLNSVSHSPVK 534
           P+P + +    PH   +CC+  ++ + +P K
Sbjct: 98  PSPHVRVEAVSPHRGLVCCVDADADAATPRK 128


>04_01_0277 +
           3681869-3681922,3681946-3682004,3683011-3683631,
           3683718-3684147
          Length = 387

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 594 ICTSQSYSWRWRIGNLL*CV*SFNDRHDGWSGLHQDIDRQRSR----KRNATH 740
           I     Y W W I   + C  S   R   W    Q+++RQ +R    KRN  H
Sbjct: 13  IAIKNQYVWTWTIVKCIICQASAVRRRWWWYERAQELERQNTRLYNEKRNLEH 65


>01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982
          Length = 406

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 638 VPNSPTPRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITT*FL-LHHTYGH 480
           + NSP PR   RC +P      C +   V  +  +   L +T   L LH+TY H
Sbjct: 169 IKNSPNPRSYYRCTNPR-----CNAKKQVERAVDEPDTLIVTYEGLHLHYTYSH 217


>07_03_1464 + 26726527-26727552
          Length = 341

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 279 AYPIPIDIMNPSDNLHTAAVCVYPTKVPDVCTALKAMKLEKNIQVAAVATGFPS 440
           A P+ +        L +AA C Y      +C  L+A+ +  N ++A  A  FP+
Sbjct: 81  ALPVVVFFHGGGFVLFSAASCYYDRLCRRICRELRAVVVSVNYRLAGPARRFPA 134


>03_02_0151 +
           5947177-5947322,5947461-5947607,5947707-5947931,
           5948036-5948213,5948328-5948595,5948684-5948786,
           5948882-5949006,5949091-5949169,5949250-5949394,
           5949500-5949660,5949750-5949870,5950081-5950275
          Length = 630

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 242 SSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLSKGIS 87
           S+P   +KS++V  F   +LS++G +T++ N D      L  + +   KG S
Sbjct: 382 SAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTS 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,247
Number of Sequences: 37544
Number of extensions: 395469
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)