Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00454
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)                 113   1e-25
SB_5266| Best HMM Match : VWA (HMM E-Value=0)                          30   2.3  
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)                  29   4.0  
SB_46281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)           28   9.2  
SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   28   9.2  

>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
          Length = 473

 Score =  113 bits (272), Expect = 1e-25
 Identities = 52/79 (65%), Positives = 63/79 (79%)
 Frame = +1

Query: 511 VVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVILGVGELGTYYNVYKASMIAMMAGAD 690
           +VI R  VL+G ++ L+ EI  M+KACG AHLK IL  GELG+  NVYKAS++AMMAG+D
Sbjct: 59  IVITRGHVLSGNYQALYEEIAAMRKACGDAHLKTILATGELGSLTNVYKASLVAMMAGSD 118

Query: 691 FIKTSTGKEAVNATLPIGL 747
           FIKTSTGKEAVNAT P+ L
Sbjct: 119 FIKTSTGKEAVNATFPVAL 137


>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
          Length = 797

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 145 SILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSKLEDFVGR 276
           +I YN +   K+E +  M  + L+D ++++ D  SS L DFV R
Sbjct: 534 NIQYNKLGCYKEESSLRMLPVRLLDKSSVAWDSFSSWLPDFVCR 577


>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
          Length = 624

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 306 NPSDNLHTAAVCVYPTKVPDVC--TALKAMKLEKNIQVAAVATGFPSGLYPLPTRLEEIR 479
           N SDN    +V  +P  V      T  KA+  +KNI +A  A G P G  P   +L + +
Sbjct: 510 NSSDN-RIYSVVDWPQMVDKYLDITGEKAISKKKNITMAKNALGAPMG-GPKDEKL-DFQ 566

Query: 480 MTVGMVQQKL 509
            T+G+  QK+
Sbjct: 567 QTIGLASQKI 576


>SB_46281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 493 WCNRNYVVIDRSLVLTGEWETLFNEIQQMKKACGSAHL 606
           +CN+ Y++ +R  +   +   LF + +  ++ C S HL
Sbjct: 30  YCNKRYILCNRYTISLLKMHELFEQHKLRRRNCNSTHL 67


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +3

Query: 303 MNPSDNLHTAAVCVYPTKVPDVCTALKAMKLEKNIQVAAVATGFPSGLYPLPTRLEEIRM 482
           +N   N H A   +   K  D+ TA +   L K +  A    G+P+    L   L +   
Sbjct: 25  VNKIGNHHAATNVLLRNKSRDLWTANQQDDLTKALSDAEKLVGYPTSFLSLRCLLSDELS 84

Query: 483 TVGMVQQKLCGYR 521
            + M  ++L G R
Sbjct: 85  NIAMYMKRLVGSR 97


>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
          Length = 592

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 620 PRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITT 510
           P +  +CADPH    CC  +++ +   + TK  S  T
Sbjct: 540 PYVYQKCADPHPAHQCCAGISASAGQRLGTKNRSSRT 576


>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 494 HTYGHSNLF*SRWERIQTRRKSCSHCSHLYVFFQLHSLQS--STYIRHLCRVDTDS 333
           H   H++   +R++     R++C H ++++V      +Q+   T  RH CR DT++
Sbjct: 64  HVDAHADTHATRYKH--ACRRTCGHATYMHVDTIQSRMQTHMQTCYRHACRHDTNT 117


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +3

Query: 309 PSDNLHTAAVCVYPTKVPDVCTALKAMKLEKNIQ-----VAAVATGFPSGLYPLPTR 464
           P + L  +AVC+YP K      A      EK +         V TG P GL   P R
Sbjct: 176 PKNGLAGSAVCLYPMKTIQSVFASSLYLEEKTVNQDPVIKGWVTTGLPQGLEATPGR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,154,069
Number of Sequences: 59808
Number of extensions: 477039
Number of successful extensions: 1139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)