Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00454
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.75 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.00 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.0  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 629 SPTPRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITT*FLLHHTYGHSNLF*SRWE 453
           +PT R+   C       IC   + ++SH+ +K  +        L  + G  N+   RWE
Sbjct: 203 TPTERLEALCWTQDEDIICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 261


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 629 SPTPRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITT*FLLHHTYGHSNLF*SRWE 453
           +PT R+   C       IC   + ++SH+ +K  +        L  + G  N+   RWE
Sbjct: 150 TPTERLEALCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 208


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 275 LPTKSSNFDDVSSPESVVKSIRVIAFISHALSSLG 171
           L  KSS FD ++S       I V   + H+++S+G
Sbjct: 95  LTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVG 129



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 593 PHAFFICCISLNSVSHSPVKTKLLSITT*FLLHHTYGHS 477
           P+    C I + S SH   + KL S+ T  +L   Y ++
Sbjct: 167 PYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNN 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,910
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)