Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00454
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23930.1 68418.m02810 mitochondrial transcription termination...    32   0.35 
At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    31   0.81 
At2g19210.1 68415.m02241 leucine-rich repeat protein kinase, put...    30   1.9  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO...    29   4.3  
At2g41470.1 68415.m05123 embryo-specific protein-related similar...    28   5.7  
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id...    28   7.6  
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id...    28   7.6  

>At5g23930.1 68418.m02810 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 457

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -2

Query: 260 SNFDDVSSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLS-KGISS 84
           +NFD+  +P+SV+K +R   F    +SS+  T   + I+   E TL   ++ L   G SS
Sbjct: 79  ANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYPRFLIE-NPEKTLRAKLHFLKLNGASS 137

Query: 83  IVSKIARTISWISKLLLK 30
             S++   +S + K+L K
Sbjct: 138 --SELTEIVSKVPKILGK 153


>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 416 CSGYRISVWFVSSPNEIRRDSNDRRYGA-TEIMWLSI-GV*F*PENGRHCLMKYNK*RKH 589
           C     S W     NEI   ++D  Y    ++++L I G  F       C    N  +K+
Sbjct: 175 CRPNHHSQWVGCDGNEIHTTASDIVYSPRNQMLFLVIMGASF------LCSFDLNMNKKY 228

Query: 590 ADLHISKL-FLALANWELIIMCIKLQ 664
             LH+  +  +  + WEL+ MCIK++
Sbjct: 229 TRLHLRNIPMMPQSEWELLAMCIKIE 254


>At2g19210.1 68415.m02241 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 881

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 112 INKSNVDSQVKSILYNNVVSP--KDERAWLMKAITLIDLTTLSGDDTSSKLEDFVGRLH 282
           IN S VD++   I+  N+ S     E       +TL+ +  LS +  + K+ DF+G LH
Sbjct: 403 INCSYVDNESPRIISVNLSSSGLTGEIDAAFSNLTLLHILDLSNNSLTGKIPDFLGNLH 461


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 4706

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 130 DSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGD 240
           DS+ K +   +V SP ++  W  +A+  +  T++SGD
Sbjct: 245 DSEPKKLYSCSVSSPNNDTVWHRQAVLRLSKTSISGD 281


>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to p300/CBP acetyltransferase-related protein
           (GI:12597461) [Arabidopsis thaliana];  similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 437 RKSCSHCSHLYVFFQLHS 384
           R SCSHC  ++   QLHS
Sbjct: 290 RASCSHCKRMWQLLQLHS 307


>At2g41470.1 68415.m05123 embryo-specific protein-related similar to
           embryo-specific protein 3 (ATS3) [Arabidopsis thaliana]
           GI:3335171
          Length = 365

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 285 PIPIDIMNPSDNLHTAAVCVYPTKVPDVCTAL 380
           P+PID   P   L  AA C Y   +   C+++
Sbjct: 30  PLPIDSFIPKPKLENAAACSYTVIIKTSCSSV 61


>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 487 TVIRISSNLVGRGYKPDGNPVATAATCMFFSNFIAFRAVHTSG 359
           + +R  +  +G  Y+PD N  +T   C  F N   FR V T+G
Sbjct: 79  STLRSQALTMGATYQPDWNAGSTLLICA-FPNTPKFRQVETNG 120


>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 487 TVIRISSNLVGRGYKPDGNPVATAATCMFFSNFIAFRAVHTSG 359
           + +R  +  +G  Y+PD N  +T   C  F N   FR V T+G
Sbjct: 79  STLRSQALTMGATYQPDWNAGSTLLICA-FPNTPKFRQVETNG 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,004
Number of Sequences: 28952
Number of extensions: 332813
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)