Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00452
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 123 3e-29
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 123 3e-29
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.1
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.9
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 5.7
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.7
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 10.0
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 10.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 10.0
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 123 bits (296), Expect = 3e-29
Identities = 56/81 (69%), Positives = 67/81 (82%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIMML 261
D+GNFSWGSE ++KTRI+ +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQV 81
Score = 75.8 bits (178), Expect = 5e-15
Identities = 42/89 (47%), Positives = 53/89 (59%)
Frame = +3
Query: 258 VVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKK 437
V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 81 VAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NP 134
Query: 438 RSQKTARKYLARQRLAKVEGALEDNSTRG 524
+S+ RK+ AR +KV+ ALE G
Sbjct: 135 KSKHVQRKHSARLGDSKVDSALETQFAAG 163
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 634
QF GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 123 bits (296), Expect = 3e-29
Identities = 56/81 (69%), Positives = 67/81 (82%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIMML 261
D+GNFSWGSE ++KTRI+ +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQV 81
Score = 74.9 bits (176), Expect = 9e-15
Identities = 42/89 (47%), Positives = 53/89 (59%)
Frame = +3
Query: 258 VVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKK 437
V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 81 VAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TP 134
Query: 438 RSQKTARKYLARQRLAKVEGALEDNSTRG 524
+S+ RK+ AR +KV+ ALE G
Sbjct: 135 KSKHVQRKHSARLGDSKVDSALETQFAAG 163
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 634
QF GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 213 LLGIGMFNSQNPYHDVVYNASNNE 284
L+ I N +NPY+D++ N S N+
Sbjct: 2386 LIFISQHNGKNPYYDLIVNISENK 2409
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 31 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 204
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 205 GNFSWGSECSTRKTRI 252
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 34 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 195
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 333 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALED 509
+TP + H KKG+K+ A++ ++R + AR+ A + K ++ED
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIED 812
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 7 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 123
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 355 YHCLNGVASTTTIAFLTRVFVRTNS 281
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 611 DRTRVLCLLRCNHRRDHTDLGDSPRKPAN 525
D + CLLR H+RD + + RK N
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVN 462
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 125 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 220
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 34 DHWHKRRATGGKRAPIRKKRKYE 102
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,662
Number of Sequences: 5004
Number of extensions: 53574
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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