Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00452
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 116 1e-26
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 116 2e-26
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.28
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 30 1.5
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 30 1.9
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 30 1.9
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.6
11_01_0551 + 4361640-4363386,4363443-4363687 29 4.5
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 5.9
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 7.8
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 116 bits (280), Expect = 1e-26
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 195
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 196 LDTGNFSWGSECSTRKTRIM 255
LDTGN+SWGSE TRKTRI+
Sbjct: 61 LDTGNYSWGSEAVTRKTRIL 80
Score = 80.6 bits (190), Expect = 1e-15
Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 425
DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
Score = 80.6 bits (190), Expect = 1e-15
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 191 QFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 116 bits (279), Expect = 2e-26
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 195
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 196 LDTGNFSWGSECSTRKTRIM 255
LDTGN+SWGSE TRKTRI+
Sbjct: 61 LDTGNYSWGSEAVTRKTRIL 80
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTE 410
DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E
Sbjct: 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQE 140
Query: 411 AEEAIINKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
E A K+S RK RQ+ ++ +E+ G
Sbjct: 141 GEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 80.6 bits (190), Expect = 1e-15
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 174 QFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 91 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 225
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 364 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTS*YGFCELNIPIP 218
C Y L GV S IA L+ + R SL+ + + YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 506 RQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
R F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 102 RPFYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 364 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTS*YGFCELNIPIP 218
C Y L GV S IA L+ + R SL+ + + YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 46 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 195
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 46 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 180
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 46 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 180
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 387 KKGAKLTEAEEAIINKK-RSQKTARKYLARQRLAKVEGALEDNSTRGVCWLAWRVAQVSV 563
+ G+ T+A E+I KK R++K +K + + A E+ G L WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 564 VAPMV 578
A +
Sbjct: 349 GADYI 353
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 145 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIMMLC 264
+H+ R G+ +Y R G F G +C TR + +LC
Sbjct: 1523 VHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLC 1562
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 31 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 153
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,306,744
Number of Sequences: 37544
Number of extensions: 386747
Number of successful extensions: 1142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -