Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00452
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              120   1e-27
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           35   0.069
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   2.0  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  120 bits (288), Expect = 1e-27
 Identities = 57/90 (63%), Positives = 67/90 (74%)
 Frame = +3

Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
           KRS    RK  AR+  AKV   +E+    G
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTG 153



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/60 (70%), Positives = 50/60 (83%)
 Frame = +1

Query: 76  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIM 255
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RI+
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = +2

Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
           QF TGRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 149 QFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 PYHDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 365
           P   V+++ +N E +    +VK +IV VD  PF  W++ +
Sbjct: 74  PILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 136 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIMMLCIMHLTMN 285
           P++I   ++ GG+TK +ALR++ G ++  S+    +    +L +MH   N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQ--GVEVEAPILSVMHSFAN 84


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 52  RATGGKRAPIRKKRKYELGRPAANTRLGP 138
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 390 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
           + AKL + EE II K+ +  TA   +  ++  K++ ALE     G
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSG 745


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 156
           P    +S D W K++    K+  I+KKR+  +    A    LG QR+  +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 216 LGIGMFNSQNPYHDVVYNASNNELVRTKTLVKNAI 320
           LG+ +F      HD +Y  +N E++R   L  N +
Sbjct: 171 LGLLLFGPVKEVHDSIYQQTNGEIIRDAALRTNRL 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,832,998
Number of Sequences: 59808
Number of extensions: 441060
Number of successful extensions: 1227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)