Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00452
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 149 1e-35
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 149 1e-35
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 149 1e-35
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 149 1e-35
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 135 1e-31
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 84 4e-16
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 149 bits (360), Expect = 1e-35
Identities = 65/79 (82%), Positives = 71/79 (89%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIM 255
D GNFSWGSEC TRKTRI+
Sbjct: 61 DVGNFSWGSECCTRKTRII 79
Score = 135 bits (327), Expect = 1e-31
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NK
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK 139
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS+K +KY R++ AK+ LE+ +G
Sbjct: 140 KRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 165 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 149 bits (360), Expect = 1e-35
Identities = 65/79 (82%), Positives = 71/79 (89%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIM 255
D GNFSWGSEC TRKTRI+
Sbjct: 61 DVGNFSWGSECCTRKTRII 79
Score = 135 bits (327), Expect = 1e-31
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NK
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK 139
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS+K +KY R++ AK+ LE+ +G
Sbjct: 140 KRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 165 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 149 bits (360), Expect = 1e-35
Identities = 65/79 (82%), Positives = 71/79 (89%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIM 255
D GNFSWGSEC TRKTRI+
Sbjct: 61 DVGNFSWGSECCTRKTRII 79
Score = 135 bits (327), Expect = 1e-31
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NK
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK 139
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS+K +KY R++ AK+ LE+ +G
Sbjct: 140 KRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 165 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 149 bits (360), Expect = 1e-35
Identities = 65/79 (82%), Positives = 71/79 (89%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIM 255
D GNFSWGSEC TRKTRI+
Sbjct: 61 DVGNFSWGSECCTRKTRII 79
Score = 135 bits (327), Expect = 1e-31
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NK
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK 139
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS+K +KY R++ AK+ LE+ +G
Sbjct: 140 KRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 165 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 135 bits (327), Expect = 1e-31
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NK
Sbjct: 60 DVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK 119
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS+K +KY R++ AK+ LE+ +G
Sbjct: 120 KRSKKIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 97.9 bits (233), Expect = 3e-20
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 180
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG T+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 145 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 84.2 bits (199), Expect = 4e-16
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 37 QFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 40.7 bits (91), Expect = 0.005
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 402 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
LT EE I+NKKRS+K +KY R++ AK+ LE+ +G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,830,197
Number of Sequences: 237096
Number of extensions: 2134578
Number of successful extensions: 4790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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