Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00452
(675 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118446-1|AAM48475.1| 208|Drosophila melanogaster SD17528p pro... 131 7e-31
AY118424-1|AAM48453.1| 208|Drosophila melanogaster RH06886p pro... 131 7e-31
AE014297-4463|AAN14192.1| 208|Drosophila melanogaster CG7808-PC... 131 7e-31
AY060597-1|AAL28145.1| 664|Drosophila melanogaster GH01406p pro... 34 0.20
AE014134-1719|ABC65887.1| 664|Drosophila melanogaster CG5899-PB... 34 0.20
AE014134-1718|ABC65886.1| 831|Drosophila melanogaster CG5899-PC... 34 0.20
AE014134-1717|AAF52824.1| 844|Drosophila melanogaster CG5899-PA... 34 0.20
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 29 7.7
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su... 29 7.7
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ... 29 7.7
AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p pro... 29 7.7
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P... 29 7.7
>AY118446-1|AAM48475.1| 208|Drosophila melanogaster SD17528p
protein.
Length = 208
Score = 131 bits (317), Expect = 7e-31
Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA--II 428
DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLGRK+ K + E+ ++
Sbjct: 80 DVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVL 139
Query: 429 NKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KKRS+K +KYL RQ+ KVE ALED T G
Sbjct: 140 TKKRSEKVMKKYLERQKYGKVEQALEDQFTSG 171
Score = 128 bits (308), Expect = 9e-30
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 199 DTGNFSWGSECSTRKTRI 252
+TGNF+W SE RKTRI
Sbjct: 61 ETGNFAWASEGVARKTRI 78
Score = 81.8 bits (193), Expect = 8e-16
Identities = 34/42 (80%), Positives = 41/42 (97%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 634
QF +GR+LAC++SRPGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 167 QFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208
>AY118424-1|AAM48453.1| 208|Drosophila melanogaster RH06886p
protein.
Length = 208
Score = 131 bits (317), Expect = 7e-31
Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA--II 428
DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLGRK+ K + E+ ++
Sbjct: 80 DVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVL 139
Query: 429 NKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KKRS+K +KYL RQ+ KVE ALED T G
Sbjct: 140 TKKRSEKVMKKYLERQKYGKVEQALEDQFTSG 171
Score = 128 bits (308), Expect = 9e-30
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 199 DTGNFSWGSECSTRKTRI 252
+TGNF+W SE RKTRI
Sbjct: 61 ETGNFAWASEGVARKTRI 78
Score = 81.8 bits (193), Expect = 8e-16
Identities = 34/42 (80%), Positives = 41/42 (97%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 634
QF +GR+LAC++SRPGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 167 QFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208
>AE014297-4463|AAN14192.1| 208|Drosophila melanogaster CG7808-PC
protein.
Length = 208
Score = 131 bits (317), Expect = 7e-31
Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA--II 428
DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLGRK+ K + E+ ++
Sbjct: 80 DVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVL 139
Query: 429 NKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KKRS+K +KYL RQ+ KVE ALED T G
Sbjct: 140 TKKRSEKVMKKYLERQKYGKVEQALEDQFTSG 171
Score = 128 bits (308), Expect = 9e-30
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 199 DTGNFSWGSECSTRKTRI 252
+TGNF+W SE RKTRI
Sbjct: 61 ETGNFAWASEGVARKTRI 78
Score = 81.8 bits (193), Expect = 8e-16
Identities = 34/42 (80%), Positives = 41/42 (97%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 634
QF +GR+LAC++SRPGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 167 QFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208
>AY060597-1|AAL28145.1| 664|Drosophila melanogaster GH01406p
protein.
Length = 664
Score = 33.9 bits (74), Expect = 0.20
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 ASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 443
AS EL KTL K A+ ++D PF W + L R G L A+E +INK+ +
Sbjct: 194 ASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQE-LINKQNT 251
>AE014134-1719|ABC65887.1| 664|Drosophila melanogaster CG5899-PB,
isoform B protein.
Length = 664
Score = 33.9 bits (74), Expect = 0.20
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 ASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 443
AS EL KTL K A+ ++D PF W + L R G L A+E +INK+ +
Sbjct: 194 ASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQE-LINKQNT 251
>AE014134-1718|ABC65886.1| 831|Drosophila melanogaster CG5899-PC,
isoform C protein.
Length = 831
Score = 33.9 bits (74), Expect = 0.20
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 ASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 443
AS EL KTL K A+ ++D PF W + L R G L A+E +INK+ +
Sbjct: 181 ASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQE-LINKQNT 238
>AE014134-1717|AAF52824.1| 844|Drosophila melanogaster CG5899-PA,
isoform A protein.
Length = 844
Score = 33.9 bits (74), Expect = 0.20
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 ASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 443
AS EL KTL K A+ ++D PF W + L R G L A+E +INK+ +
Sbjct: 194 ASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQE-LINKQNT 251
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 234 NSQNPYHDVVYNASNNELVRTK----TLVKNAIVVVDATPFRQW 353
N++ P HDV+ NA+ L R TLV NAIV + P+ QW
Sbjct: 450 NNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPY-QW 492
>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin
subunit SMC4 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 MFNSQNPYHDVV-YNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 365
M + + P+++ V Y NELVRTK+ I+ + + Q+ + H
Sbjct: 300 MKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEH 346
>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
homolog Gluon protein.
Length = 1409
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 MFNSQNPYHDVV-YNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 365
M + + P+++ V Y NELVRTK+ I+ + + Q+ + H
Sbjct: 300 MKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEH 346
>AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p
protein.
Length = 1012
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 MFNSQNPYHDVV-YNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 365
M + + P+++ V Y NELVRTK+ I+ + + Q+ + H
Sbjct: 300 MKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEH 346
>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
protein.
Length = 1409
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 MFNSQNPYHDVV-YNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 365
M + + P+++ V Y NELVRTK+ I+ + + Q+ + H
Sbjct: 300 MKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEH 346
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,211,979
Number of Sequences: 53049
Number of extensions: 633395
Number of successful extensions: 1734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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