Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00452
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 122 3e-28
AL132864-3|CAE46684.2| 103|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 28 7.0
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 7.0
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 122 bits (293), Expect = 3e-28
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NK
Sbjct: 80 DTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNK 139
Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
KRS T +KY RQ+ A V+ L + G
Sbjct: 140 KRSHHTMKKYTERQKTAAVDALLIEQFNTG 169
Score = 119 bits (287), Expect = 2e-27
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = +1
Query: 19 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 198
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 199 DTGNFSWGSECSTRKTRIM 255
D+GNFSW SE +TRKTRI+
Sbjct: 61 DSGNFSWASEQTTRKTRIV 79
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/44 (72%), Positives = 41/44 (93%)
Frame = +2
Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
QF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 165 QFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>AL132864-3|CAE46684.2| 103|Caenorhabditis elegans Hypothetical
protein Y53H1A.4 protein.
Length = 103
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 302 GLCTHQFIVRCIIHNIMIRVLRVEHSDPQEKLPVSRRSARYLVFPPR 162
G C+ F++ C+ +I+ R +R H P+ KL V R RYL+ R
Sbjct: 4 GKCSIIFLLFCVFGSILSRAIRKRH--PEGKL-VIRDCKRYLIMYSR 47
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 276 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 449
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 450 TARKYLARQRLAK-VEGALED 509
R++ A +LA+ ALED
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 276 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 449
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 450 TARKYLARQRLAK-VEGALED 509
R++ A +LA+ ALED
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 169 GNTKYRALRLDTGNFSWGSECSTRKTRIMMLC-IMHLTMNW 288
G T ++ +R +TG F W +C + LC +M + W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 169 GNTKYRALRLDTGNFSWGSECSTRKTRIMMLC-IMHLTMNW 288
G T ++ +R +TG F W +C + LC +M + W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 276 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 449
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 450 TARKYLARQRLAK-VEGALED 509
R++ A +LA+ ALED
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,421
Number of Sequences: 27780
Number of extensions: 313961
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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