Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00452
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   116   1e-26
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   115   3e-26
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    31   0.93 
At1g32630.1 68414.m04025 expressed protein                             31   0.93 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.8  
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    28   5.0  

>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  116 bits (279), Expect = 1e-26
 Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
 Frame = +1

Query: 19  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 195
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 196 LDTGNFSWGSECSTRKTRIM 255
           LDTGNFSWGSE  TRKTRI+
Sbjct: 61  LDTGNFSWGSEAVTRKTRIL 80



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/44 (77%), Positives = 41/44 (93%)
 Frame = +2

Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
           QF +GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 162 QFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 44/90 (48%), Positives = 55/90 (61%)
 Frame = +3

Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 434
           DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     
Sbjct: 81  DVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV---- 136

Query: 435 KRSQKTARKYLARQRLAKVEGALEDNSTRG 524
           K+S    RK   RQ    ++  LE+  + G
Sbjct: 137 KKSNHVQRKLEMRQEGRALDSHLEEQFSSG 166


>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
 Frame = +1

Query: 19  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 195
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 196 LDTGNFSWGSECSTRKTRIM 255
           LDTGN+SWGSE +TRKTR++
Sbjct: 61  LDTGNYSWGSEATTRKTRVL 80



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 53/100 (53%), Positives = 62/100 (62%), Gaps = 10/100 (10%)
 Frame = +3

Query: 255 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAE 416
           DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E E
Sbjct: 81  DVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGE 140

Query: 417 EAII----NKKRSQKTARKYLARQRLAKVEGALEDNSTRG 524
           EA +      K+S    RK  +RQ    ++  +ED    G
Sbjct: 141 EAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 34/44 (77%), Positives = 41/44 (93%)
 Frame = +2

Query: 509 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 640
           QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 176 QFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 364 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTS*YGFCELNIPIP 218
           C  Y  L GV S+  +A L+ +  R  SL+   +  + Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At1g32630.1 68414.m04025 expressed protein
          Length = 133

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 372 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEDN 512
           L +  K+G  L + +E +I + ++++  R+Y AR+R+ + E   +DN
Sbjct: 6   LSIDEKEG--LIDKDEVMIRRMKNRERQRRYRARKRMREEEAGNDDN 50


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 285 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 413
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
           family protein contains Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 503

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -2

Query: 299 LCTHQFIVRCIIHNIMIRVL-----RVEHSDPQEKLPVSR 195
           LC HQF V C+   I +R+L     R  H   + KL V R
Sbjct: 173 LCGHQFCVECMTQYIKVRLLEESEMRCPHYQCESKLTVVR 212


>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 346

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 356 IPLPEWSCIYYNNCI-----LDKGLCTHQFIVRCIIHNIMIRVL 240
           I +P    I +NN +         +C HQF V C+ H I +++L
Sbjct: 149 ICMPATCSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLL 192


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 7   DPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 144
           DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 209 DPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,489
Number of Sequences: 28952
Number of extensions: 294352
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)