Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00450
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 137 7e-33
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 136 2e-32
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 116 2e-26
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 70 2e-12
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 9e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.92
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 2.1
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 30 2.1
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 2.8
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.8
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.9
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9) 28 6.5
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 8.5
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.5
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 137 bits (332), Expect = 7e-33
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SS
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISS 121
Query: 434 MVLTKMKETAEAYLGKTVQNAVITVP 511
MVL KMKETAEAYLG+ V +AVITVP
Sbjct: 122 MVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 124 bits (300), Expect = 5e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 252 MTP 260
+ P
Sbjct: 61 LNP 63
Score = 108 bits (260), Expect = 4e-24
Identities = 50/57 (87%), Positives = 55/57 (96%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 681
AYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLGGGT
Sbjct: 148 AYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGT 204
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 136 bits (329), Expect = 2e-32
Identities = 60/86 (69%), Positives = 72/86 (83%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SS
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISS 121
Query: 434 MVLTKMKETAEAYLGKTVQNAVITVP 511
MVLTKMKETAEAYLG V +AV+TVP
Sbjct: 122 MVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 129 bits (312), Expect = 2e-30
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 252 MTP 260
M P
Sbjct: 61 MNP 63
Score = 105 bits (252), Expect = 4e-23
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 681
AYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLGGGT
Sbjct: 148 AYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGGT 204
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 130 bits (313), Expect = 1e-30
Identities = 59/64 (92%), Positives = 61/64 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 252 MTPT 263
M PT
Sbjct: 61 MNPT 64
Score = 113 bits (272), Expect = 1e-25
Identities = 63/111 (56%), Positives = 73/111 (65%), Gaps = 25/111 (22%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV-- 427
+P NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVN 121
Query: 428 -----------------------SSMVLTKMKETAEAYLGKTVQNAVITVP 511
SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 122 EAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 108 bits (259), Expect = 5e-24
Identities = 53/57 (92%), Positives = 53/57 (92%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 681
AYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLGGGT
Sbjct: 241 AYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGT 297
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 422 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 511
++SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 511 AYFNDSQRQATKDAG 555
AYFNDSQRQATKDAG
Sbjct: 173 AYFNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 116 bits (278), Expect = 2e-26
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 434 MVLTKMKETAEAYLGKTVQNAVITVP 511
MVLTKMKETAEAYLGK V +AV+TVP
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 100 bits (239), Expect = 1e-21
Identities = 46/57 (80%), Positives = 53/57 (92%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 681
AYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLGGGT
Sbjct: 846 AYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGT 901
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMTP 260
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 70.9 bits (166), Expect = 9e-13
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMV 439
NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAML 180
Query: 440 LTKMKETAEAYLGKTVQNAVITVP 511
T++K TAE L V + VI+VP
Sbjct: 181 FTRLKTTAEIALKTKVTDCVISVP 204
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 490 ECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 660
+C +Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 661 FDLG 672
D+G
Sbjct: 258 VDIG 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 245
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/57 (59%), Positives = 43/57 (75%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 681
A F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLGGGT
Sbjct: 178 AEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGT 233
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 252 MTP 260
+ P
Sbjct: 90 INP 92
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVS 430
+P NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIG 150
Query: 431 SMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA 568
V+ K++ AE L TV AV++VP +K + ++ SLA
Sbjct: 151 GYVIKKLRTMAERNLTTTVTKAVMSVP-AEFDIKQRNATVKAASLA 195
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/73 (54%), Positives = 44/73 (60%), Gaps = 26/73 (35%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIAY 618
A+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIAY
Sbjct: 47 AHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAY 106
Query: 619 GLDKK--GTGERN 651
GLDK G ERN
Sbjct: 107 GLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +2
Query: 377 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 511
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +1
Query: 514 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGT 681
+FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G +
Sbjct: 115 FFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASS 174
Query: 682 S 684
+
Sbjct: 175 T 175
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 371 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 511
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 141 GKVEIIANDQGNRTTPSYVAFTDTERLI 224
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 236 QEPGGDDPNNTIFDA 280
G DP NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 150 EIIANDQGNRTTPSYVAFT-DTERL 221
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 368 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQK 547
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 548 MQ 553
Q
Sbjct: 714 SQ 715
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 111 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVS 290
T++ + H I+ N G +TP + T A + + MTPT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 291 SDVSSKMLLCKP 326
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 553 LHLLWLVFESH*STRNRDNCILHSFAKIS 467
++ LWL F + S+ + D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 258 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 160
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 236 QEPGGDDPNNTIFDA 280
G DP N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 230 CRQEPGGDDPNNTIFDAKRLIGRKFEDATVQADMKHWP 343
C Q D N TI K L+ + ED ++HWP
Sbjct: 389 CLQICANSDGNLTITPVKTLVFKAAEDTKPSHHLRHWP 426
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 18 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 104
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 465 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 286
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 285 RLASNIVL 262
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
Length = 341
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/101 (23%), Positives = 40/101 (39%)
Frame = +2
Query: 233 RQEPGGDDPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 412
R+ G D + T + +IG F QAD+ + + K+++ F
Sbjct: 53 RKSTGKVDNSKTYTAGRYMIGPDFTFKKYQADLHFVQLDTFAVFTSGKLELL-----SVF 107
Query: 413 FPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKD 535
P +V S L+++ ETA VQ + T +KD
Sbjct: 108 IPNDVKSRYLSQVIETANEERETFVQREKLVRKETEKLIKD 148
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 660 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 574
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,748,199
Number of Sequences: 59808
Number of extensions: 580536
Number of successful extensions: 1830
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -