Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00443
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   1.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.3  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 181 GHRWRDDGRQEIVRSKRQ 128
           GH W+ D  +E VR++ Q
Sbjct: 117 GHEWQADVSEEAVRARMQ 134


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 536 TGLSDGNSSPFFVAAGVLGAITVSTPSEDNRDS 438
           T    G S    V +GV+  + V    E+N DS
Sbjct: 59  TATQTGESEMMVVTSGVIPGVAVDFLGENNDDS 91


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 498 GSRSPGSDHGQH 463
           G+RSPG DH ++
Sbjct: 14  GARSPGGDHSEN 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,671
Number of Sequences: 336
Number of extensions: 3337
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)