Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00443
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.67 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   6.3  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +1

Query: 370 HGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGR 549
           H  ++ Q    + L +     TVE  L  + ++ V +   P A+    +F  L   RSG+
Sbjct: 561 HDELTGQAVNAFILLKPGYEATVE--LEKELIMAVRSTIGPFASPRKLIFSDLPKTRSGK 618

Query: 550 RLRSPLRKLRA--TKQNNDLGTL*IKKV 627
            +R  LRK+ A    Q  DL TL   KV
Sbjct: 619 IMRRILRKILAGEVDQIGDLSTLADPKV 646


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 409  LPENCNPDTVESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLRSPLRKLRATK 588
            L +N     ++  L  + +     P  P    NG++    K + S   L   LRK R  K
Sbjct: 906  LKKNLEEFGLDELLEDEDIRPRSKPPRPRLPPNGKITTGRKRIASSVFLNQSLRKKRCLK 965

Query: 589  QN 594
            +N
Sbjct: 966  EN 967


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 370 HGYISRQFTRRYALPENCNPDT 435
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,724
Number of Sequences: 5004
Number of extensions: 54171
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)