Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00443
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 44 9e-05
03_02_0483 - 8804021-8804485 44 9e-05
03_02_0485 - 8808139-8808618 44 1e-04
03_02_0478 + 8775892-8776377 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 42 7e-04
01_01_0229 - 1943473-1943922 41 9e-04
01_01_0231 + 1951047-1951499 41 0.001
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 39 0.005
01_01_0227 + 1933247-1933699 36 0.033
06_01_1017 - 7951985-7952425 32 0.40
11_02_0041 - 7669692-7670312 31 0.70
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 31 0.70
02_02_0077 - 6586638-6587165 31 1.2
03_05_0543 - 25404630-25405408,25405461-25405605 30 1.6
12_02_1174 - 26696869-26698191 29 4.9
12_02_0046 + 12830974-12832386 29 4.9
07_01_0533 + 3942813-3943164,3943244-3943458 28 8.6
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 28 8.6
02_01_0760 - 5639315-5639685,5640072-5640360 28 8.6
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 432
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 433 TVESRLSSDGVLTVIAPR 486
+++ + +GVLTV P+
Sbjct: 130 QIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 432
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 433 TVESRLSSDGVLTVIAPR 486
+++ + +GVLTV P+
Sbjct: 123 QIKASM-ENGVLTVTVPK 139
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 432
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 433 TVESRLSSDGVLTVIAPR 486
+++ + +GVLTV P+
Sbjct: 128 QIKASM-ENGVLTVTVPK 144
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 432
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 433 TVESRLSSDGVLTVIAPRTPA 495
+++ + +GVLTV P+ A
Sbjct: 130 QIKASM-ENGVLTVTVPKEEA 149
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 432
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 433 TVESRLSSDGVLTVIAPR 486
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.1 bits (92), Expect = 9e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 432
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 433 TVESRLSSDGVLTVIAPR 486
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 277 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 432
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 433 TVESRLSSDGVLTVIAPR 486
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Frame = +1
Query: 247 LE*DK-FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----F 393
+E DK ++ D+ S EE+ V D +++ G+H++ + E G+ + +
Sbjct: 138 MEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSY 197
Query: 394 TRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATK 504
R ALP+ C+ V + L +GVL V P+T K
Sbjct: 198 DMRLALPDECDKSKVRAEL-KNGVLLVTVPKTEVERK 233
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 337 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPR 486
V+GK++ER S +F RR+ LP D V + + +GVLTV P+
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>06_01_1017 - 7951985-7952425
Length = 146
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 304 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 471
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 472 VIAPRTPAATK 504
V+ P+ PA +
Sbjct: 124 VVVPKEPAPAR 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 388 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTP 492
+F RR+ +P + V +RL DGVLTV P+ P
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVP 174
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +3
Query: 102 TAFAIRTSGWRLLLTIS*RPSSRQRCPEITTGRGSRWRWPI--ETSVPPSPRIGQIPGQL 275
TA A R W +R R P RW WP S PP PR PG
Sbjct: 3 TALASRVESWARDQAARLPAWARPRPPSAAAAAVPRWPWPWPWSWSWPPPPRAPAWPGDR 62
Query: 276 RR 281
RR
Sbjct: 63 RR 64
>02_02_0077 - 6586638-6587165
Length = 175
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 414
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 415 ENCNPDTVESRLSSDGVLTVIAPRTP 492
E+ + D V + DGVLTV + P
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKP 150
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 432
+ ++LD F EEI V + G++ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 433 TVESRLSSDGVLTVIAPRTPA 495
+ ++ ++ + + +TP+
Sbjct: 95 GIRAKFENEALTITLPKKTPS 115
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 268 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 447
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 448 LSSDGVLTVIAPRTPAA 498
D L + P AA
Sbjct: 85 F-DDHKLIITLPLVAAA 100
>12_02_0046 + 12830974-12832386
Length = 470
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +3
Query: 372 WLHLSSVHAALRSA*KLQP*HCRISVVLXXXXXXXXSQDSGCHEERRAVPITQTGPVRKE 551
WL + H LR A L+P CR+ V Q+S + P P
Sbjct: 126 WL-MEEYHLCLRQASDLEPVLCRVYVSPRAAKDSAAHQESAALTPQEPAPPLAHAPAPAP 184
Query: 552 IKEPTA 569
I+EP A
Sbjct: 185 IQEPAA 190
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 394 TRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLRSPLRK 573
TR LP CN T + S + + +P TP AT PS P +G +P
Sbjct: 97 TRALELPAACNVKTPPASQCSTVGVPMPSPATP-ATPAAPAVPSETPAGTGGSKATPTTA 155
Query: 574 LRATKQNNDLGTL 612
T Q+ G++
Sbjct: 156 TTTTGQSASGGSV 168
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -1
Query: 513 LAVLRGSRSPGSDHGQHAVRGQPRF--DSVRVAVFRQSVTPRELTRDVAMLVLPLLVLTF 340
+ +L GS+S DHG AV G S+R+ V V ELT ++ ML L +LVL
Sbjct: 511 VGMLIGSQST-LDHGLFAVLGSAALLGGSMRMTV-SVCVVILELTNNLLMLPLVMLVLLI 568
Query: 339 DDDVA 325
VA
Sbjct: 569 SKTVA 573
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGK-----HEER-QDEHG--YISRQFTRRYAL 411
+++++ +V +++ V DG + + G+ E+R +D G + + + L
Sbjct: 122 ERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAATYHAGLLL 181
Query: 412 PENCNPDTVESRLSSDGVLTVIAPRTP 492
PE+ + + + + DGVL V PR+P
Sbjct: 182 PEDAVAEGITAEVR-DGVLHVTVPRSP 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,097
Number of Sequences: 37544
Number of extensions: 401278
Number of successful extensions: 1408
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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