Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00443
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 69 3e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 66 4e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 5e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 58 7e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 58 7e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 54 9e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 4e-04
SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.31
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.2
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 29 2.9
SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 8.8
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +1
Query: 247 LE*DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 423
+E DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+
Sbjct: 35 MEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGV 93
Query: 424 NPDTVESRLSSDGVLTVIA 480
+ TV SR++ DG+L + A
Sbjct: 94 DVSTVSSRITGDGLLHIEA 112
Score = 27.5 bits (58), Expect(2) = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 397 RRYALPENCNPDTVESRLSSDGVLTVIAPR 486
R + LP++ + D++ SRL DG L + A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
Score = 21.4 bits (43), Expect(2) = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 259 KFQVNLDVQHFSPE 300
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 65.7 bits (153), Expect = 4e-11
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 432
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 433 TVESRLSSDGVLTVIAPR--TPAATKN 507
++ +R++ DG+L V A + PA T+N
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTEN 89
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 259 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDT 435
KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 436 VESRLSSDGVLTVIAPRTP 492
+ RL DGVL + A + P
Sbjct: 157 LVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 454 SDGVLTVIA 480
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/101 (32%), Positives = 50/101 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 96 DKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 154
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLR 558
+ +RL +G L A ++ A P+L PVR LR
Sbjct: 155 LTTRLDKEGKLHFEAKKSVA--------PALPPVRELMVLR 187
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +1
Query: 244 HLE*DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPEN 420
+L+ D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 235 YLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEG 293
Query: 421 CNPDTVESRLSSDGVLTVIAPRTPAATKNGE 513
V++R+S+ G L + A + GE
Sbjct: 294 VEASNVKTRISNHGQLHIEAMKALPGPDGGE 324
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 454 SDGVLTVIAPRTPAATKNGE 513
+ G L + A + GE
Sbjct: 71 NHGQLHIEAMKALPGPDGGE 90
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLR 558
+ +RL +G L A + A P+L PVR + L+
Sbjct: 390 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 422
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/95 (31%), Positives = 47/95 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVR 540
+ +RL +G L A + A P+L PVR
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVR 182
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/80 (36%), Positives = 46/80 (57%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 454 SDGVLTVIAPRTPAATKNGE 513
+ G L + A + GE
Sbjct: 71 NHGQLHIEAMKALPGPDGGE 90
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLR 558
+ +RL +G L A + A P+L PVR + L+
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 188
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/80 (36%), Positives = 46/80 (57%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 454 SDGVLTVIAPRTPAATKNGE 513
+ G L + A + GE
Sbjct: 71 NHGQLHIEAMKALPGPDGGE 90
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLR 558
+ +RL +G L A + A P+L PVR + L+
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 188
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 454 SDGVLTVIAPRTPAATKNGE 513
+ G L + A + GE
Sbjct: 71 NHGQLHIEAMKALPGPDGGE 90
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/106 (29%), Positives = 52/106 (49%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLRSPLRK 573
+ +RL +G L A + A P+L PVR + L+ + +
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLKDNISR 193
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 54.4 bits (125), Expect = 9e-08
Identities = 37/119 (31%), Positives = 58/119 (48%)
Frame = +1
Query: 256 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 435
DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDS 155
Query: 436 VESRLSSDGVLTVIAPRTPAATKNGELFPSLKPVRSGRRLRSPLRKLRATKQNNDLGTL 612
+ +RL +G L A + A P+L PVR + LR + + T + LG L
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLRD--KTMEETPRGLILGAL 204
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 274 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 453
LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 13 LDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 454 SDGVLTVIA 480
+ G L + A
Sbjct: 72 NHGQLHIEA 80
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 259 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 417
KF + LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 244 HLE*DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEH 372
HL+ D+F + D H +E+ ++T + Y+ + H +R + H
Sbjct: 46 HLDTDEFHIETDELHIDIDELHIETYELYIDTDELHTDRNEIH 88
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 346 KHEERQDEHGYISRQFTRRYAL 411
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 340 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 471
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/85 (18%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 265 QVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTVE 441
++ ++V+ F+ +++S++ +I++G+ ++ D G+ RQF R P++ + +++
Sbjct: 101 KLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKSTDMKSIK 158
Query: 442 SRLSSDGVLTVIAPRTPAATKNGEL 516
+ L +L + A + +G++
Sbjct: 159 ATLKYGDILEIEAQKERLIDTSGKI 183
>SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 96 NLTAFAIRTSGWRLLLTIS*RPSSRQRCPEITTGRGSRWRWPIETSVPPSPRIG 257
N ++F +R G ++ P SR+RC + SR R I P S RIG
Sbjct: 32 NSSSFLLRKDGHSRCAILTIAPYSRRRCAILAIAPYSRRRCAILAIAPYSRRIG 85
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 310 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 417
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 66 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 197
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,412,325
Number of Sequences: 59808
Number of extensions: 446953
Number of successful extensions: 1513
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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