Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00443
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.96 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
 Frame = +1

Query: 55  KYKNVTAAIHPGIPT*PPSRSGLRAGAYS*RSPDGRHHAN---------DVQRLLPAVEA 207
           +++ V A++ P  P  P   S     AY+    D   H           D + LLP V  
Sbjct: 170 QFQTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWV 229

Query: 208 DGDGQ*RRRFHHHLE 252
            G+ +   R   HLE
Sbjct: 230 GGESEALARLERHLE 244


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 186 ITTGRGSRWRWPIETSVPPSPRIGQIP 266
           I TG       P+  S+PP P    +P
Sbjct: 748 IQTGANVNLWQPLSVSIPPPPSAQNVP 774


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 587 FVALNFRSGLLNLLPDRTGLSDGN 516
           FV +N+R G+L  L     +  GN
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGN 176


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 587 FVALNFRSGLLNLLPDRTGLSDGN 516
           FV +N+R G+L  L     +  GN
Sbjct: 24  FVTINYRLGILGFLSTEDEVVPGN 47


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 587 FVALNFRSGLLNLLPDRTGLSDGN 516
           FV +N+R G+L  L     +  GN
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGN 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,345
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)