Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00441
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   1.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   5.5  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    24   7.3  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   7.3  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   7.3  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    23   9.6  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    23   9.6  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 8    PHLSVWPYFIISKMDMNIFVRKCCAIYYIHF 100
            PHL    Y ++ +  + IF+RKC  ++Y  +
Sbjct: 1706 PHLLFTLYKLLERFSL-IFLRKCALLWYCRY 1735


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  LVCMALLYHLKDGYEYIRSKMLCYI 87
           L+C A +  ++DGYE+   + LC +
Sbjct: 427 LICRAHMV-VEDGYEFFNDRTLCTV 450


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 201 LQKTTNKMYKVKRPLLLLSRGALWEPTDFR 112
           L++ TNK+Y+  R   LLS G   + + FR
Sbjct: 349 LKEQTNKLYEAYRTERLLSSGISQDHSVFR 378


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 236 SSPARNYTGCEFYKKLQTKCTKSSDRCCCC 147
           S+P  + T   ++KKL T  T   D  C C
Sbjct: 205 STPISDRTDLSYHKKLNTLFTAYWDLQCMC 234


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 206 HILCSSAPGSMLAQYILLFEVSFG 277
           ++LC +AP ++L  Y+L++  + G
Sbjct: 245 YVLCFAAPLNILLNYLLVWHPTIG 268


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 248 IVRASSPARNYTGCEFYKKLQTKCTKSSDRCCCC 147
           +V+  +  R  TGC   +K + KC +    C  C
Sbjct: 33  LVKRQARKRTKTGCLTCRKRRIKCDERKPICYNC 66


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 329 FNENLNETKNLHCGRY 282
           F+E L  T+N  CGRY
Sbjct: 250 FSEYLKTTQNTICGRY 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,098
Number of Sequences: 5004
Number of extensions: 26938
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)