Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00441
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    27   3.8  
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349...    26   8.7  
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233...    26   8.7  

>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 207 TSCVVPRRARCSHNIYYYLKLVSVLIPTAMQIFRLI*IFIEIT 335
           T+ V+ R AR  H +Y  L   +++  +      L+ IF+E+T
Sbjct: 510 TALVLSRFARIDHGLYAVLGAAALMSGSMRMTVSLVVIFLELT 552


>11_06_0032 +
           19432305-19432510,19433390-19434326,19434880-19434975,
           19435518-19435654,19435888-19436056
          Length = 514

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 148 VPGRTLGTYRFQIYCSKVYIVYSTTFSNEYI 56
           +PGR     +F ++ S  Y++    +S++YI
Sbjct: 206 LPGRMAPLMKFYVFMSLAYLLVMVVWSSQYI 236


>10_01_0216 -
           2329413-2330419,2331382-2331537,2332363-2332897,
           2333026-2333514
          Length = 728

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 2   GAPHLSVWPYFIISKMD--MNIFVRKCCAIYYIHFRTVNLKSVGSQS 136
           G  H+  W   I++  +    IFVR    ++ IH  ++  K++G  +
Sbjct: 281 GLGHMGGWQNLIVAYDEDYQLIFVRTINGVFMIHLESMQFKNLGKDN 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,025,301
Number of Sequences: 37544
Number of extensions: 160487
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)