Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00441
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 28 1.7
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 27 5.1
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 26 6.8
SB_5424| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_42006| Best HMM Match : EGF_2 (HMM E-Value=8.7e-05) 26 6.8
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07) 26 9.0
SB_46165| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_14057| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_13303| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_10807| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 177 TFCL*FFVEFTSCVVPRRARCSHNIYYYLKLVSVLI 284
+FCL F + FT C+ R + C I ++ + VSV I
Sbjct: 89 SFCLRFALHFTLCIGKRVSEC--RIVFFSRRVSVFI 122
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 158 CCCCPGAHFGNLQISDLLF 102
CCCC G F + + SD F
Sbjct: 1197 CCCCHGREFPSARTSDKCF 1215
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 11 HL-SVWPYFIISKMDMNIFVRKCCAIYYIHFRTVNLKSVGSQSAPR 145
HL S +P +S++ N+FV KC + RT + SVG + + R
Sbjct: 259 HLKSGYPRSKLSELHGNMFVEKCDKCNKEYVRTTAVASVGQKRSGR 304
>SB_5424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 215 TGCEFYKKLQ-TKCTKSSDRCCCCPGAHFGNLQISD 111
TG FY + TKCT+ C GNLQ SD
Sbjct: 621 TGWSFYNPGKFTKCTEPGHSACLDQYPADGNLQFSD 656
>SB_42006| Best HMM Match : EGF_2 (HMM E-Value=8.7e-05)
Length = 326
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 182 KCTKSSDRCCCCPGAH 135
+CTKS RC C PG H
Sbjct: 145 RCTKSRFRCECDPGWH 160
>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
Length = 729
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 40 LKDGYEYIRSKMLCY--ILYTL*NSKSEICRFPKCAPGQQQQRSLDFVH 180
+++ + +++ LC+ + T N S++CR P+C G+ +R +H
Sbjct: 74 VEERWTQVKNAGLCFNCLRPTNANHYSQVCRQPRCGVGECVERHHRLLH 122
>SB_46165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 163 TVVAAVPGRTLGTYRFQIYCSKVYIVYSTTFSNEYIHIHL*DDKVRPYRQVGG 5
T V+ P + + R Q+ Y + SN Y H + DD ++ Y + G
Sbjct: 7 TPVSTEPPTKISSERRQLLLGADYCSMAAAVSNRYRHSLIRDDNLQQYHRKPG 59
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 207 TSCVVPRRARCSHNIYYYLKLVSVLIPTAMQIFRLI*IFIEITI 338
+SCV+ R RC N Y L +V +++ + + R + + + I +
Sbjct: 403 SSCVLTRLERCGEN--YVLMVVIIIVVAVVAMMRPMIVVVMIMV 444
>SB_14057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 241 EHRARRGTTQDVNSTKNYKQNVQSQATVVAAVPGRTL 131
EHR+R T N ++ + TV A PG+T+
Sbjct: 14 EHRSRNSRTTFAKFANNVREQLMFANTVFANRPGQTV 50
>SB_13303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 241 EHRARRGTTQDVNSTKNYKQNVQSQATVVAAVPGRTL 131
EHR+R T N ++ + TV A PG+T+
Sbjct: 130 EHRSRNSRTTFAKFANNVREQLMFANTVFANRPGQTV 166
>SB_10807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 241 EHRARRGTTQDVNSTKNYKQNVQSQATVVAAVPGRTL 131
EHR+R T N ++ + TV A PG+T+
Sbjct: 36 EHRSRNSRTTFAKFANNVREQLMFANTVFANRPGQTV 72
>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 146 PGAHFGNLQISDLLF*SVYSI*HNIFERIYSYP 48
PGA N+ +SD+ S +S+ NIFE+IY P
Sbjct: 92 PGAV--NIPLSDIT--SAFSLPPNIFEQIYDVP 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,165
Number of Sequences: 59808
Number of extensions: 200811
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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