Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00441
(340 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 27 2.6
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 26 6.0
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 26 6.0
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 26 7.9
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 26 7.9
U28944-3|AAN63455.1| 205|Caenorhabditis elegans Hypothetical pr... 26 7.9
U28944-2|AAL08028.1| 339|Caenorhabditis elegans Hypothetical pr... 26 7.9
U28944-1|AAA68368.1| 342|Caenorhabditis elegans Hypothetical pr... 26 7.9
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 26 7.9
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 26 7.9
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 26 7.9
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 26 7.9
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 26 7.9
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 297 ALRSVSAPKLTSNNNIYCASIEPGAELHRM*ILQKTTNKMYKVKRPL 157
A +++SA K N+ ++PG + + +L K KM+ ++ P+
Sbjct: 92 AAKTISALKTKRYGNLIRKRLQPGKIVQKKGLLAKVDKKMHLIRAPV 138
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 188 QTKCTKSSDRCCCCP 144
QTKCTK+SD C P
Sbjct: 206 QTKCTKTSDNCYGLP 220
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 71 KCCAIYYIHFRTVNLKSVGSQSAPRDSSNNGRLTLYILFVVFCRIHILCSSAPGSMLAQY 250
K +Y+ ++++LK + + + +G L LF+ + R + C S S L+ +
Sbjct: 1039 KLAIAFYMIIKSIHLKFIKAPYISPNKDEHGNLKPSELFIRWQRALLECES--HSALSLF 1096
Query: 251 ILLFEVSFGADTDR 292
I FE S D R
Sbjct: 1097 ISTFEGSIKWDKSR 1110
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 248 IVRASSPARNYTGCEFYKKLQTKCTKSSDRCCC 150
+V SPA NY G + YK +T C+ D C
Sbjct: 173 VVCLYSPAGNYIGMDIYKSGET-CSNCPDGTNC 204
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 212 GCEFYKKLQTKCTKSSDRCCCCPG 141
GC L C +SS +C C PG
Sbjct: 411 GCHPVGSLGKSCNQSSGQCVCKPG 434
>U28944-3|AAN63455.1| 205|Caenorhabditis elegans Hypothetical
protein C18A3.4c protein.
Length = 205
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 16 VCMALLYHLKDGYEYIRSKMLCYILYTL*NSKSEICRFPKCAP 144
V + LL H+ DG+ + +KM+ + Y + C FP C P
Sbjct: 121 VIICLLLHIFDGHHALVTKMMQRLQYVEIATPPFCCLFP-CLP 162
>U28944-2|AAL08028.1| 339|Caenorhabditis elegans Hypothetical
protein C18A3.4b protein.
Length = 339
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 16 VCMALLYHLKDGYEYIRSKMLCYILYTL*NSKSEICRFPKCAP 144
V + LL H+ DG+ + +KM+ + Y + C FP C P
Sbjct: 121 VIICLLLHIFDGHHALVTKMMQRLQYVEIATPPFCCLFP-CLP 162
>U28944-1|AAA68368.1| 342|Caenorhabditis elegans Hypothetical
protein C18A3.4a protein.
Length = 342
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 16 VCMALLYHLKDGYEYIRSKMLCYILYTL*NSKSEICRFPKCAP 144
V + LL H+ DG+ + +KM+ + Y + C FP C P
Sbjct: 121 VIICLLLHIFDGHHALVTKMMQRLQYVEIATPPFCCLFP-CLP 162
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 212 GCEFYKKLQTKCTKSSDRCCCCPG 141
GC L C +SS +C C PG
Sbjct: 411 GCHPVGSLGKSCNQSSGQCVCKPG 434
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 212 GCEFYKK-LQTKCTKSSDRCCCCPGAHFGN 126
GC+ + K + KC K + C C PG FG+
Sbjct: 556 GCKLHCKCVNGKCDKETGECTCQPG-FFGS 584
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 212 GCEFYKK-LQTKCTKSSDRCCCCPGAHFGN 126
GC+ + K + KC K + C C PG FG+
Sbjct: 556 GCKLHCKCVNGKCDKETGECTCQPG-FFGS 584
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 212 GCEFYKK-LQTKCTKSSDRCCCCPGAHFGN 126
GC+ + K + KC K + C C PG FG+
Sbjct: 556 GCKLHCKCVNGKCDKETGECTCQPG-FFGS 584
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 212 GCEFYKK-LQTKCTKSSDRCCCCPGAHFGN 126
GC+ + K + KC K + C C PG FG+
Sbjct: 556 GCKLHCKCVNGKCDKETGECTCQPG-FFGS 584
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,107,533
Number of Sequences: 27780
Number of extensions: 158340
Number of successful extensions: 445
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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