Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00441
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)...    30   0.34 
At1g74670.1 68414.m08647 gibberellin-responsive protein, putativ...    27   2.4  
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    27   4.2  
At2g20465.1 68415.m02389 expressed protein                             27   4.2  
At5g65030.1 68418.m08180 expressed protein  ; expression support...    26   5.6  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    26   5.6  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    25   9.7  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    25   9.7  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    25   9.7  

>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
           gibberellin-responsive protein 4 identical to SP|P46690
           Gibberellin-regulated protein 4 precursor {Arabidopsis
           thaliana}
          Length = 106

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 206 EFYKKLQTKCTKSSDRCCCCPGAHFGNLQI 117
           +++K   T C K   +C C P  ++GN Q+
Sbjct: 60  QYHKACITFCNKCCRKCLCVPPGYYGNKQV 89


>At1g74670.1 68414.m08647 gibberellin-responsive protein, putative
           similar to SP|P46690 Gibberellin-regulated protein 4
           precursor {Arabidopsis thaliana} GASA4; contains Pfam
           profile PF02704: Gibberellin regulated protein
          Length = 101

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 224 RNYTGCEFYKKLQTKCTKSSDRCCCCPGAHFGNLQI 117
           R  +  +++K     C K   +C C P   +GN Q+
Sbjct: 49  RRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQV 84


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 29  YFIISKMDMNIFVRKCCAIYYIHFRTVNLKSVGSQSAPRDSSNNGRLTLYILFVVFCRIH 208
           Y  +S+MD+  F  + C    ++ R+VNL+   +     D +   +  +   F   CR H
Sbjct: 69  YKSVSEMDLESFQTEACKQVLLYPRSVNLEKFRNMKLKIDDTRAVKYFVCSGFKESCRHH 128

Query: 209 ILCSS 223
              S+
Sbjct: 129 YSISN 133


>At2g20465.1 68415.m02389 expressed protein 
          Length = 89

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -3

Query: 230 PARNYTGCE-FYKKLQTK---CTKSSDRCCC 150
           PAR    C+ F K+L+ +   CT   ++CCC
Sbjct: 54  PARGLASCDLFCKRLKFESGLCTGDLEKCCC 84


>At5g65030.1 68418.m08180 expressed protein  ; expression supported
           by MPSS
          Length = 202

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 294 LRSVSAPKLTSNNNIYCASI--EPGAELHRM*ILQKTTNKMYKVKRPLLL 151
           LR  S  ++     +   S+   PG E+ R+ ++ ++ N + + +RPLLL
Sbjct: 98  LRKSSKSEVVGRGEVSWESVFESPGMEIERLVVMGESKNWVLEDERPLLL 147


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 77  CAIYYIHFRTVNLKSVGSQSAPRDSSNNGRLTLYILFVVFCRIHILCSSAPGSMLAQYIL 256
           C I +++ R   ++ V S S   ++S  GR+  Y   VV   + I  +   G++LA    
Sbjct: 471 CGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTS 530

Query: 257 LFEVSFGAD 283
             EV +  +
Sbjct: 531 QAEVEWACE 539


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 309 DEKFALRSVSAPKLTSNNNIYCASIEPGAELHRM*ILQKTTNKMYKV 169
           D K  + S+   KL     ++  S+E  AEL     +Q+T N  Y+V
Sbjct: 358 DGKRGILSIQPVKLHQRLPLFLGSLEDVAELESYGDVQQTVNPGYEV 404


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 204 FTSCVVPRRARCSHNIYYYLKLVSVLIPTAMQIFRLI*IFIEI 332
           FTS +V RR     N Y  L LVS  I   +  FR + ++I +
Sbjct: 223 FTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPL 265


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 204 FTSCVVPRRARCSHNIYYYLKLVSVLIPTAMQIFRLI*IFIEI 332
           FTS +V RR     N Y  L LVS  I   +  FR + ++I +
Sbjct: 223 FTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPL 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,328
Number of Sequences: 28952
Number of extensions: 133963
Number of successful extensions: 325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)