Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00440
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 170 2e-43
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 109 3e-25
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 109 3e-25
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 98 1e-21
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 90 3e-19
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 49 6e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 40 5e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.22
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.88
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 4.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 4.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 8.2
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 8.2
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 8.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.2
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 170 bits (413), Expect = 2e-43
Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 1/198 (0%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-TT 266
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ P T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 267 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMDQT*DQGSI*G*RQNLFPRGSQFHGAYE 446
+ + + + + K S ++ ++ + ++ G ++ P +
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 447 NEGNCRSLSWQNCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLD 626
+ + + AYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLD
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLD 217
Query: 627 KKGTGERNVLIFDLGGGT 680
K T E++++++DLGGGT
Sbjct: 218 KTDT-EKHIVVYDLGGGT 234
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +1
Query: 367 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
+P ++V G+ K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVP
Sbjct: 131 RPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVP 178
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSNLRSR*HIRVKTKPFSPRK 424
+P NTIFD KRLIGRKF++ T+ D+K +PF +V+D + ++ K K F+P +
Sbjct: 93 NPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEE 149
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +2
Query: 680 FDVSILTIEDGIFE 721
FDVS+L+I++G+FE
Sbjct: 235 FDVSLLSIDNGVFE 248
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 109 bits (263), Expect = 3e-25
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP 260
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
Score = 102 bits (245), Expect = 4e-23
Identities = 49/57 (85%), Positives = 51/57 (89%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 680
AYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGT
Sbjct: 146 AYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGT 202
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/48 (66%), Positives = 40/48 (83%)
Frame = +1
Query: 367 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
KP I+V +KGE KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVP
Sbjct: 98 KPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVP 145
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSNLRSR*HIRVKTKPFSPRK 424
+P+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ + + +TK F+P +
Sbjct: 60 NPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEE 116
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 680 FDVSILTIEDGIFE 721
FDVS+LTIE+GIFE
Sbjct: 203 FDVSLLTIEEGIFE 216
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 109 bits (263), Expect = 3e-25
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP 260
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
Score = 105 bits (253), Expect = 5e-24
Identities = 50/57 (87%), Positives = 52/57 (91%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 680
AYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGT
Sbjct: 146 AYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGT 202
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +1
Query: 367 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
KP ++V YKGE KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVP
Sbjct: 98 KPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVP 145
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSNLRSR*HIRVKTKPFSPRK 424
+P+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S + + +TK F+P +
Sbjct: 60 NPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEE 116
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 680 FDVSILTIEDGIFE 721
FDVS+LTIE+GIFE
Sbjct: 203 FDVSLLTIEEGIFE 216
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 680
AYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGT
Sbjct: 150 AYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGT 206
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP 260
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AM P
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
Score = 59.7 bits (138), Expect = 4e-10
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD 361
+P NT+FDAKRLIGR++ED Q D+KHWPF+V+ +
Sbjct: 64 NPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDN 99
Score = 59.3 bits (137), Expect = 5e-10
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +1
Query: 370 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
P I+V Y GE K F +E+S+MVLTKMKE +EA L K V+ AVITVP
Sbjct: 103 PTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVP 149
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 90.2 bits (214), Expect = 3e-19
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 680
AYFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGT
Sbjct: 192 AYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGT 246
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 254
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 255 TPTTQY 272
P +
Sbjct: 109 NPENTF 114
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 403 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVP
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVP 191
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVV 355
+P NT F KRLIGR+F++ VQ D+K P+++V
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIV 142
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 49.2 bits (112), Expect = 6e-07
Identities = 20/59 (33%), Positives = 38/59 (64%)
Frame = +3
Query: 75 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEA 61
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLG 671
A+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G
Sbjct: 150 AWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFG 207
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 248
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQL 79
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 492 CSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 671
C YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++ + G
Sbjct: 166 CVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFG 225
Query: 672 GGTS 683
S
Sbjct: 226 ATRS 229
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 397 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
++K E S L ++ E+AE +LG V V++VP
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTT 266
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 267 QYSMPNV 287
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 82 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 177
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 168 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARLLV 4
G W SP S + H ++++ +F +RVL C+ L K +K+A L V
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALLAV 325
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 186 PSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDVSSKMLLC 320
P +A T ER++ AAK A+ T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 304 RRCYCASRHEALAFRGCQ*WIKPKIKVAY 390
R C+ A R F+GC WI+ IK +
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGDIKACF 375
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 435 GAYENEGNCRSLSWQNCAECSYHGSAYFND 524
GAY N C +S N A CS SA ND
Sbjct: 1689 GAYSNA--CVDISLSNLALCSILNSALIND 1716
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 254 DPNNTI--FDAKRLIGRKFEDATVQADMKHWPFEVVSDGSNLRSR*HIRVKTKPFSP 418
D TI FDA +L + ++K E+V +G+ R+ H+R K F P
Sbjct: 822 DERKTIDHFDAGKLSPEGYRVLVKDTNLKLPNGEIVRNGTIFRNTAHLRYKADTFVP 878
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +1
Query: 310 CYCASRHEALAFRGCQ*WIKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAY 471
CY + Q W +IK G +FP VSS VL K K+ E +
Sbjct: 237 CYILKPWSYSIWEAIQGWFDKEIKKL--GVRNGYFPLFVSSKVLEKEKDHVEGF 288
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 357 LTTSKGQCFMSACTVASSNLRPMRRLASNIVLLGSSPPGSWRHL 226
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 198 AFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDV 299
AF D + G AK A P+T+ + N+S V
Sbjct: 155 AFYDASQTFGSTAKVAPAPAPSTKTPLANISKPV 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,901
Number of Sequences: 5004
Number of extensions: 69822
Number of successful extensions: 262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -