Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00439
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    29   0.52 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   1.2  
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    27   1.6  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.1  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   2.1  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   2.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    27   2.1  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    26   3.6  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   4.8  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   4.8  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   4.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.3  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   8.4  

>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 426 WGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSNL 268
           W F  SFF  FIT+ I F   +I  + N     + FL  +  K  +  + N+ Y SNL
Sbjct: 384 WNFLISFFTPFITNSIGFKYGYIFASCNLTGAAIIFLFVHETKGRTLEEINTMYASNL 441


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 429 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 319
           +WGF  SFF  FIT+ I F   +I       F ACN+
Sbjct: 413 LWGFLISFFTPFITNSIGFKYGYI-------FAACNL 442


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 89  N*KSVMAKPKNEDASEEAKKIVDDAKNFIERA 184
           N KS++ KPKN  +++E K+++  +K+ I+ A
Sbjct: 2   NKKSILKKPKNAQSTQE-KQLITWSKSLIDEA 32


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 405 FFNFITDLINFFVYFIPININVAFLA 328
           FFN +    N F+ F PI I + F+A
Sbjct: 133 FFNILLRSFNLFIIFSPIIITLPFIA 158


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 429 IWGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSN 271
           +W F  SFF  FIT+ I F   +I  + N     V FL  +  K  +  + N  Y S+
Sbjct: 413 LWNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTFLFAHESKGLTLEEINELYLSD 470


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 113 PKNEDASEEAKKIVDDAKNF 172
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 429 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 319
           +WGF  +FF  FI+D I F   +I       F ACN+
Sbjct: 413 LWGFLITFFTPFISDSIGFKYGYI-------FAACNL 442


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 279 FSNLHRNETVIHPDAVPKISCLVAEVLPISAMALSIK 169
           F+ +++  T + PD  P  SC+  + +P+S   + I+
Sbjct: 119 FAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIE 155


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 429 IWGFSSSFFFNFITDLINFFVYFIPI 352
           IWG     FFN +  +  F+V   PI
Sbjct: 480 IWGSCIGLFFNILCLMAQFYVSLFPI 505


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 95  KSVMAKPKNEDASEEAKKIVDD-AKNFIERAIAD 193
           K   +KP NED  E+ K I +D +K   E++ +D
Sbjct: 223 KQKSSKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 426 WGFSSSFFFNFITDLINF-FVY-FIPININVA---FLACNV*KNDSTSKSNSCYFSNL 268
           W F  SFF  FI++ I F + Y F   N+  A   FL     K  +  + N  Y SN+
Sbjct: 416 WNFMISFFTPFISNSIGFKYGYVFAACNLCAAIIIFLFAKETKGLTLEEINQLYLSNI 473


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 358  DKINKKVDKISDKIEKEATGKSPDWFEKVFVF 453
            D I   +D++ DK+    +G+   ++E+ F F
Sbjct: 1479 DSIKPILDRVMDKMINSLSGEDKQFYEREFTF 1510


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 309 DSTSKSNSCYFSNLHRNETVIHPDAVPKISCLVAEVLPISAMALSIKFLASSTIF 145
           DSTS  + C    LH N ++ HPD+  + S +V     ++ ++L  + +A   ++
Sbjct: 360 DSTSIIHPC----LHLNASLTHPDSKSEASEVVFVGPSLAHLSLQCRGIAEKALY 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,952
Number of Sequences: 5004
Number of extensions: 37547
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)