Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00439
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   5.0  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   5.0  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   8.7  

>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
 Frame = +1

Query: 337 GYIDINWDKINKKVDKISDKIEKE----ATGKSP------DWFEKVFVFVKSNSYYSAGF 486
           GYI+INW K+ K  +K+S  +E+E    A G S           ++F + K N   ++GF
Sbjct: 86  GYININWKKVEKDYNKVSRHVEREVYKVAQGNSSTEQRIVGTGRQIFDYAKRNMAAASGF 145

Query: 487 TGGFLFGM 510
            GGFL GM
Sbjct: 146 AGGFLIGM 153


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 340 YIDI-NWDKINK-KVDKISDKIEKEATGKSPDWFEKVFVFVK 459
           YI I + +K+ K K D+I +   K +TG +P+W E++F+F K
Sbjct: 767 YITILSEEKVEKRKHDRIPENT-KTSTGYTPNWTEEIFIFDK 807


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 255 FHFYEDWKSSSCWTWRWSHSSTHCK 329
           F F   + S S WTW WS   T C+
Sbjct: 2   FWFPSSFNSWSPWTWNWSFVGTACR 26


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 343 IDINWDKINKKVDKISDKIEKEATGKSPDWFEK 441
           +D N + +NK + +  DK+EKE   K   W  K
Sbjct: 77  LDQNAEAVNKALSERVDKLEKEQRAKMDQWETK 109


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 110 KPKNEDASEEAKKIVDDAKNFIERAIADIGKTSA 211
           KPK +D+  E  KI+  +   IE  I D+  T++
Sbjct: 244 KPKGDDSEVEKAKIIQTSARLIESEIKDLPTTTS 277


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 107 AKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSAT 214
           ++P+ EDA + +  +++DA       I D  K SAT
Sbjct: 303 SRPREEDAVKHSATVIEDAVKHSSTVIEDAVKHSAT 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,713
Number of Sequences: 59808
Number of extensions: 237199
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)