Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00439
         (596 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011027-1|AAR30187.1|  156|Drosophila melanogaster RE45833p pro...    43   1e-05
AE014134-1797|AAF52886.1|  156|Drosophila melanogaster CG5676-PA...    43   1e-05
AY113337-1|AAM29342.1| 1190|Drosophila melanogaster AT31843p pro...    33   0.29 
AE014296-3639|AAF51795.2| 1536|Drosophila melanogaster CG14562-P...    33   0.29 

>BT011027-1|AAR30187.1|  156|Drosophila melanogaster RE45833p
           protein.
          Length = 156

 Score = 43.2 bits (97), Expect(2) = 1e-05
 Identities = 18/42 (42%), Positives = 29/42 (69%)
 Frame = +1

Query: 331 QKGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVFVFV 456
           Q+G I INW K++K VDK++DK+E  + G+  +W +K   +V
Sbjct: 61  QEGLIKINWSKLDKSVDKLADKVE-ASLGREKNWKDKTERYV 101



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 176 ERAIADIGKTSATKQLILGTASGWIT 253
           ++   DIG+ SA  Q+++G +SGW+T
Sbjct: 9   KKVFNDIGQRSAYSQMLIGVSSGWVT 34



 Score = 23.8 bits (49), Expect(2) = 1e-05
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 553 ERFVDRKLDKAEEL 594
           ER+VD +LD+AE L
Sbjct: 98  ERYVDNQLDRAESL 111


>AE014134-1797|AAF52886.1|  156|Drosophila melanogaster CG5676-PA
           protein.
          Length = 156

 Score = 43.2 bits (97), Expect(2) = 1e-05
 Identities = 18/42 (42%), Positives = 29/42 (69%)
 Frame = +1

Query: 331 QKGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVFVFV 456
           Q+G I INW K++K VDK++DK+E  + G+  +W +K   +V
Sbjct: 61  QEGLIKINWSKLDKSVDKLADKVE-ASLGREKNWKDKTERYV 101



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 176 ERAIADIGKTSATKQLILGTASGWIT 253
           ++   DIG+ SA  Q+++G +SGW+T
Sbjct: 9   KKVFNDIGQRSAYSQMLIGVSSGWVT 34



 Score = 23.8 bits (49), Expect(2) = 1e-05
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 553 ERFVDRKLDKAEEL 594
           ER+VD +LD+AE L
Sbjct: 98  ERYVDNQLDRAESL 111


>AY113337-1|AAM29342.1| 1190|Drosophila melanogaster AT31843p
           protein.
          Length = 1190

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = -3

Query: 351 NINVAFLACNV*KNDSTSKSNSCYFSNLHRNETVIHPDAVPKISCLVAEVLPISAMALSI 172
           NI    LA    K++S  +S+S   S+   NE  ++   VP++ C++ +   +  +A S 
Sbjct: 315 NIAARLLAEAKAKHNSLLRSSSAVQSSTVANEWTLYNLEVPRVECVIED---LEGIAESY 371

Query: 171 KFLASSTIFLASSEASSFLGLAIT 100
           +  +SS  F    EA   L +++T
Sbjct: 372 RSASSSNFFDLMEEAHVMLRISLT 395


>AE014296-3639|AAF51795.2| 1536|Drosophila melanogaster CG14562-PA
           protein.
          Length = 1536

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = -3

Query: 351 NINVAFLACNV*KNDSTSKSNSCYFSNLHRNETVIHPDAVPKISCLVAEVLPISAMALSI 172
           NI    LA    K++S  +S+S   S+   NE  ++   VP++ C++ +   +  +A S 
Sbjct: 661 NIAARLLAEAKAKHNSLLRSSSAVQSSTVANEWTLYNLEVPRVECVIED---LEGIAESY 717

Query: 171 KFLASSTIFLASSEASSFLGLAIT 100
           +  +SS  F    EA   L +++T
Sbjct: 718 RSASSSNFFDLMEEAHVMLRISLT 741


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,180,448
Number of Sequences: 53049
Number of extensions: 337107
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)