Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00439
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    32   0.33 
At5g35753.1 68418.m04282 expressed protein                             30   1.0  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    30   1.3  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    30   1.3  
At4g23950.1 68417.m03444 expressed protein ; expression supporte...    28   4.1  
At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein co...    27   7.2  
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain...    27   7.2  
At1g62410.1 68414.m07041 MIF4G domain-containing protein similar...    27   7.2  
At2g38370.1 68415.m04714 expressed protein                             27   9.5  

>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 372  FVYFIPININVAFLACNV*KNDSTSKSNSCYFSNLHRNETVIHPDAVPKISCLVAEVLP- 196
            F++ +P+ +   F+  N+   DSTS   S   +  H     +     P  S L+ E+LP 
Sbjct: 897  FLFMVPLVVISGFVFVNIGPKDSTSLLTSLSTTTSHLPPPFLSTAPAPAPSPLLPEILPS 956

Query: 195  ISAMALSIK 169
            + A +LS K
Sbjct: 957  LPASSLSTK 965


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 240 DAVPKISCLVAEVLPISAMALSIKFLASST 151
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 391 DGMPRLYCMVREVLSVQPFKIDIAYLSSKT 420


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 240 DAVPKISCLVAEVLPISAMALSIKFLASST 151
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 240 DAVPKISCLVAEVLPISAMALSIKFLASST 151
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At4g23950.1 68417.m03444 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 195 ISAMALSIKFLASSTIFLASSEASSFLGLAITD 97
           +  + +S+ F+  +TI L S+   +FLG++ITD
Sbjct: 406 LGVLLISLFFVVLATIRLVSTRLWAFLGMSITD 438


>At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein
           contains similarity to hydantoin utilization protein C
           [Pseudomonas sp.] SWISS-PROT:Q01264; contains Pfam
           profile PF01546: Peptidase family M20/M25/M40
          Length = 525

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -3

Query: 282 YFSNLHRNETVIHPDAVPKISCLVAEVLPISAMALSIKFLASSTIFLASSEASSFLGLAI 103
           Y ++ H +    HP  V    CLV  +L  S +ALS    +SS+   +SS +SS + L I
Sbjct: 21  YHTSFHHHHHHNHPSLV-LFWCLVFSLL--SPLALSSSSSSSSSSSDSSSSSSSHISLGI 77


>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains weak hit to Pfam PF00917: MATH
           domain
          Length = 552

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 328 SQKGYIDINWDKINKKVDKISDKIEKEATG 417
           S   + D++W  + KK+D++ DK E+E +G
Sbjct: 480 SPLSFDDVDW--LEKKLDQVKDKKEREQSG 507


>At1g62410.1 68414.m07041 MIF4G domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02854: MIF4G domain
          Length = 223

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 389 VIKLKKKLLENPQIGLKRSLFLSKVIHIIQQGLRED 496
           +++  K L  +PQ+ +   L + K+IH+   G++ D
Sbjct: 169 ILRRLKNLSNHPQLVMSLRLMVGKIIHLHSIGIKSD 204


>At2g38370.1 68415.m04714 expressed protein 
          Length = 522

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 98  SVMAKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQL 223
           SV+A+    DA EEA+K V+DA + +E   A++ K    K++
Sbjct: 296 SVLARSAR-DAEEEARKRVEDAMSRVEE--ANVSKKDVLKKV 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,849
Number of Sequences: 28952
Number of extensions: 175931
Number of successful extensions: 469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)