Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D207 Cluster: Chromosome undetermined scaffold_35, wh...    35   1.8  
UniRef50_A4Q7K5 Cluster: Immunoglobulin/major histocompatibility...    35   2.4  
UniRef50_Q1FKX4 Cluster: Helicase-like:DEAD/DEAH box helicase-li...    33   5.5  
UniRef50_UPI00006CBF0D Cluster: hypothetical protein TTHERM_0030...    33   9.7  
UniRef50_A5MPJ1 Cluster: Multimeric flavodoxin WrbA; n=5; Strept...    33   9.7  

>UniRef50_A0D207 Cluster: Chromosome undetermined scaffold_35, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_35,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 308

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 517 LFEKSK*SWSMENISMSSFGAVHVSDSIRDNKSTFLSILEYTSLFNVTSTFMNHN 353
           L++K K  W + + +      +H+S  I + KS +   L+  SL  +   F+N+N
Sbjct: 82  LYDKEKSDWWISDFTFEELKELHLSQCINNRKSEYDGHLQIPSLKEIVEYFLNYN 136


>UniRef50_A4Q7K5 Cluster: Immunoglobulin/major histocompatibility
           complex; Tetratricopeptide- like helical; n=2; core
           eudicotyledons|Rep: Immunoglobulin/major
           histocompatibility complex; Tetratricopeptide- like
           helical - Medicago truncatula (Barrel medic)
          Length = 857

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 645 GDSCCSKSNSA*SLEIPLSEQVLLIALEVSDTFSEHMLKSGIDSS 511
           GD C    +    L + L+ Q LL AL + D++S + LKSG+ S+
Sbjct: 539 GDDCVPGEDGRLKLSMSLARQCLLNALHLLDSYSTNRLKSGLPSN 583


>UniRef50_Q1FKX4 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
           n=1; Clostridium phytofermentans ISDg|Rep:
           Helicase-like:DEAD/DEAH box helicase-like - Clostridium
           phytofermentans ISDg
          Length = 1759

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -2

Query: 368 IYESQLNFFYKKKLEMFLCSIKKYWDL 288
           +Y+++L+FFY K+ EMF   +KKY +L
Sbjct: 782 VYDNKLSFFYGKEKEMFKRQLKKYEEL 808


>UniRef50_UPI00006CBF0D Cluster: hypothetical protein
           TTHERM_00309920; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00309920 - Tetrahymena
           thermophila SB210
          Length = 1291

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 630 NSNCPRFSYKTRARRTAGSDSRRTHEPQHPGC 725
           NSNCP FSY   ++     DS   + PQ   C
Sbjct: 383 NSNCPSFSYLDNSKNKCYCDSNAVYSPQANSC 414


>UniRef50_A5MPJ1 Cluster: Multimeric flavodoxin WrbA; n=5;
           Streptococcus pneumoniae|Rep: Multimeric flavodoxin WrbA
           - Streptococcus pneumoniae SP19-BS75
          Length = 234

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -1

Query: 693 GYRSRQSSSHEFCMRNGDSCCSKSNSA*SLEIPLSEQVLLIALEVSDTFSEHMLKSGIDS 514
           G R+  S + E+  R      S++N   S   P + +     LE+S++ SE + K GID 
Sbjct: 9   GVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSE-----LEISNSDSEELFKKGIDR 63

Query: 513 SRNPNSPG 490
             N +  G
Sbjct: 64  QSNADDGG 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,017,231
Number of Sequences: 1657284
Number of extensions: 14830243
Number of successful extensions: 38835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38820
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)