Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    25   0.48 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   2.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 344 FYKKKLEMFLCSIKKYWDLDTVLSAFFNY 258
           F+ KK+E  +CSIK   +L+ + + FF +
Sbjct: 189 FFAKKMEGLVCSIK---ELNMIFNEFFGW 214


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 720 LGAGARGSVG-YRSRQSSSHEFCMRNGDSC 634
           L + A+GS+  Y        EFC RNG +C
Sbjct: 42  LSSLAKGSLKQYTCELKLWWEFCQRNGHNC 71


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 198 NKILPARHHAVVTFTICRT*IVEKSRQYCIKIPVLF 305
           N +  +R   +VTFT  R+     S ++C+ I  +F
Sbjct: 292 NTVEESRIFGLVTFTPDRSKFRPSSLRFCLNILSIF 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,576
Number of Sequences: 336
Number of extensions: 3943
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)