Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   4.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   6.4  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   8.5  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   8.5  

>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 332 KLEMFLCSIKKYWDLDTVLSAFFNYLCAAYGKGNDRMVPSW 210
           +LE  + +I  Y D ++++   F  LCA Y   N + V SW
Sbjct: 335 ELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQYVSSW 375


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 543 EHMLKSGIDSSRNPNSPGPWRISP 472
           +H + S IDS+RNP+S G  R  P
Sbjct: 438 QHDVNSLIDSNRNPSSGGQSRTVP 461


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 381 LKSEVYSNMDKKVDLLSLIESDTWTAPNELMEIFSMDQDYLDFSKSQFQISTYALK 548
           + S + S M+   +LL   ++DTWT+   L      +Q+ ++F++    IS+ A K
Sbjct: 67  ISSSLRSEMEMSNNLLKNTQNDTWTSTVGLS--VPENQEAMNFNEGPTGISSIASK 120


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 185  SGSRKQDIAS*APCGRYLYHMPH 253
            +GSR       +PCGR+L  MPH
Sbjct: 1262 NGSRDAIAGVRSPCGRFLAMMPH 1284


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = -1

Query: 675 SSSH-EFCMRNGDSCCSKSNSA*SLEIPLSEQVLLIALEVSDTFS----EHMLKSGIDSS 511
           S SH      N +  C++S+   S   PL+  V  +AL +    S    +H+        
Sbjct: 348 SGSHLSILTTNPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQHITVYSASPF 407

Query: 510 RNPNSPGPWRISP 472
            +P+    W+ +P
Sbjct: 408 DSPSQNAEWQKTP 420


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 341 YKKKLEMFLCSIKKYWDLDTVLSAFFNYLCA-AYGKGND 228
           +++K E    ++KKYW      S  FN  CA  Y +GND
Sbjct: 67  FERKFEHVFQALKKYW------SPVFNACCAFHYFEGND 99


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 496 SWSMENI-SMSSFGAVHVSDSIRDNKSTFLSI 404
           +WS  N+ ++   G   +  SIRDN  TF+++
Sbjct: 117 NWSQHNVFAIDITGIDELQQSIRDNGGTFVNL 148


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 401 QYG*KSGLVVSDRVRHVDGAK*THGDILHGPGLFGFLEESIPDFNICSENV 553
           +Y  K GL + D +RH      T  D L  PG   F+  ++      S N+
Sbjct: 16  KYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVSLETRISRNI 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,502
Number of Sequences: 5004
Number of extensions: 65904
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)