Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330...    29   3.9  
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282...    28   8.9  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    28   8.9  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    28   8.9  
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241...    28   8.9  
02_02_0643 + 12590928-12592172,12592609-12592698                       28   8.9  

>08_01_0374 +
           3301301-3301521,3301723-3301852,3301895-3301903,
           3302349-3302486,3302616-3302948,3303280-3303463,
           3303647-3303819
          Length = 395

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 140 DYHFSLRNNTPLRENHCSY 84
           D H  LR+N PL ++HC Y
Sbjct: 149 DLHHLLRSNQPLTDDHCQY 167


>11_06_0656 +
           25926192-25926289,25927530-25927659,25928248-25928294,
           25929274-25929388,25929504-25929753,25930079-25930239,
           25930372-25930567,25930672-25930836,25930918-25931070,
           25931160-25931248,25931385-25931423,25931460-25931681,
           25933503-25934165
          Length = 775

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 414 KVDLLSLIESDTWTAPNELMEIFSMDQDYLDFSKSQFQIS 533
           +++ + +++    +  NE+M + SMD + L+ S SQ Q S
Sbjct: 389 QLERIQVVDRQVSSVGNEVMSVSSMDNNMLEVSSSQQQHS 428


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 735 PDDDILGAGARGSVGYRSRQSSSHEFCMRNGDSCC 631
           PD D LG G  G+ G   R  +    C+  GD  C
Sbjct: 215 PDLDGLGGGGGGASGSGCRHPARVRVCVGGGDGVC 249


>04_04_0348 +
           24568834-24568904,24569019-24569148,24569310-24569459,
           24569546-24569650,24569808-24570029,24570162-24570274,
           24570371-24570470,24571125-24571325,24571401-24571549,
           24571624-24571765,24571851-24571991,24572098-24572286,
           24572622-24572835,24573198-24573291,24573671-24573905,
           24574242-24574433,24574919-24575017,24575443-24575532,
           24575709-24575912,24575994-24576269,24576974-24577096,
           24577453-24577608,24577686-24577802,24577878-24577957,
           24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 470 HGDILHGPGLFGFLEESIPDFNI 538
           HG     PG FG+L+ ++P FN+
Sbjct: 80  HGSFAECPGHFGYLKLALPVFNV 102


>03_02_0701 -
           10523053-10523220,10523802-10523916,10524102-10524172,
           10524263-10524420,10524497-10524590,10524678-10524766,
           10525322-10525419,10525492-10525625,10525714-10525797,
           10525903-10526151
          Length = 419

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 719 WVLGLVGPSAIGAGSPPRTSFV*ETGTVAVQNRIQHDHWKFHCLNRC 579
           +VL +  P    A S  RT F+    ++A   R QHD WK    N C
Sbjct: 108 FVLQIYAPIEDNAASFHRTLFMFMCPSMACLLRDQHDQWKHRQGNPC 154


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 691 LSEPAVLLARVLYEKRGQLLFKIEFSMITGNSTV 590
           + EP  +LAR L E RG LL  + F + T  +TV
Sbjct: 255 MPEPGEVLARYLVESRGHLLMVVRF-VSTEKATV 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,945,719
Number of Sequences: 37544
Number of extensions: 397437
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)