Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00438
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 31 1.3
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3) 29 5.2
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 28 6.9
SB_4097| Best HMM Match : DUF888 (HMM E-Value=3.4) 28 6.9
SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38) 28 6.9
SB_26342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_16898| Best HMM Match : IncA (HMM E-Value=0.36) 28 9.1
SB_47755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019) 28 9.1
SB_10364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 702 GSVGYRSRQSSSHEFCMRNGDSCCSKSNSA*SLEIPLSEQVLLI-ALEVSDTFSEH 538
GS+G+ S +SSHE NG S + + + + + VLL A +VS F++H
Sbjct: 1366 GSLGFHSNTNSSHETSRNNGLDDVSTDSQSYQNSV-IGDNVLLYPAQKVSSDFTDH 1420
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 454 RRQMNSWRYSPWTRTIWISRRVNSRF 531
RR W YS W +W+S ++++F
Sbjct: 1287 RRSSQVWTYSDWVDRVWLSHEMSAKF 1312
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 322 CFYAVSKSTGILIQYCRLFSTIYVRH 245
CF KS G ++Q+C S++Y+ H
Sbjct: 363 CFNVTDKSAGHIVQHCTKLSSLYLVH 388
>SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3)
Length = 309
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 600 IPLSEQVLLIALEVSDTFSEHMLKSGIDSSRNPNSPGPWRI 478
I L+ Q L A V+DT+SE LKS +++ N G W+I
Sbjct: 71 IHLTVQEFLAAKYVTDTYSEENLKSFVENHIN---DGAWKI 108
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 109 R*GKTTVLINTQT*QCEDDTTVRGSVKREVQIPAR 5
R G T NT T C++ +RGSV R Q+ R
Sbjct: 468 RVGSLTFYPNTMTFACDEGFLIRGSVTRRCQLNRR 502
>SB_4097| Best HMM Match : DUF888 (HMM E-Value=3.4)
Length = 130
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 365 YESQLNFFYKKKLEMFLCSIKKYWDLDTVLSAFFNYLCAAYGKGNDRMVPSW 210
Y++ + + KK+ LC + YW + F +L A G + +P W
Sbjct: 12 YDAPIQYINKKRFNFGLCEVPLYW-----ANILFAFLAVAGQVGQNVSLPLW 58
>SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)
Length = 488
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 365 YESQLNFFYKKKLEMFLCSIKKYWDLDTVLSAFFNYLCAAYGKGNDRMVPSW 210
Y++ + + KK+ LC + YW + F +L A G + +P W
Sbjct: 12 YDAPIQYINKKRFNFGLCEVPLYW-----ANILFAFLAVAGQVGQNVSLPLW 58
>SB_26342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 353 LNFFYKKKLEMFLCSIKKY---WDLDTVLSAFFNYLC 252
++F+ ++ LE+ +I Y W L T SAFF +C
Sbjct: 79 IDFYIREGLELSPVTINPYLFGWKLQTYRSAFFKIMC 115
>SB_16898| Best HMM Match : IncA (HMM E-Value=0.36)
Length = 466
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 448 VSDSIRDNKSTFLSILEYTSLFNVTSTFMNHN*IFSIKKNWKCFY 314
VS +++DNK +S E++ + N F K NWKCF+
Sbjct: 371 VSKALKDNK---ISDEEFSLILNEVDKFEALKLQIRQKSNWKCFF 412
>SB_47755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 600 IPLSEQVLLIALEVSDTFSEHMLKSGIDSSRNPNSPGPWRI 478
I L+ Q L A V+DT+SE LKS ++ N G W+I
Sbjct: 71 IHLTLQEFLAAKHVTDTYSEEDLKSFVEDHIN---DGAWQI 108
>SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)
Length = 507
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 600 IPLSEQVLLIALEVSDTFSEHMLKSGIDSSRNPNSPGPWRI 478
I L+ Q L A V+DT+SE LKS ++ N G W+I
Sbjct: 211 IHLTLQEFLAAKHVTDTYSEEDLKSFVEDHIN---DGAWQI 248
>SB_10364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 456 PSTCLTLSETTSPLFYPYWNTLHFSMLHQH 367
P + +T S SPLF PY+ L+ ++ +H
Sbjct: 31 PDSSITASSQYSPLFSPYYRRLNNQIVGKH 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,340,795
Number of Sequences: 59808
Number of extensions: 477624
Number of successful extensions: 1171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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