Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U40423-4|AAA81453.2|  243|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/85 (21%), Positives = 39/85 (45%)
 Frame = -3

Query: 367 FMNHN*IFSIKKNWKCFYAVSKSTGILIQYCRLFSTIYVRHMVKVTTAWCLAGNILFTRT 188
           F  H+ +     NW   Y  S    I++    LF +++V    KVT +  + G  +F + 
Sbjct: 46  FNTHDHVNHFSYNWGLNYHFSLFLTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQV 105

Query: 187 GMSKRELIYDVFVSSQIITSHFAII 113
                 ++Y ++ +  ++T + +I+
Sbjct: 106 ------ILYQLYTTYHLLTRNISIV 124


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 337 KKNWKCFYAVSKSTGILIQYCRL-FSTIYVRHMVKVTTAW 221
           K  W+ FYA+   TGI I + +   + IY+  +  ++T++
Sbjct: 259 KLQWQMFYALVSQTGIPILFMQFPMTLIYITCLANISTSF 298


>U40423-4|AAA81453.2|  243|Caenorhabditis elegans Hypothetical
           protein C24H10.1 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = -2

Query: 224 MVPSWQYLVYXXXXXXXXXXXXXVCVKPDYHFSLRNNTPLRENHCSYKY 78
           M PSWQ +                C +P  H     N      HC+YK+
Sbjct: 33  MSPSWQVVDIREFRATHHHGLWLDCTRPQLHLVKSQNKDDLPLHCTYKF 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,517
Number of Sequences: 27780
Number of extensions: 366670
Number of successful extensions: 833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)