Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 VDLLSLIESDTWTAPNELMEIFSMDQ 494
           V +L    S++W A NEL + F ++Q
Sbjct: 300 VPMLQGFPSNSWVAINELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 VDLLSLIESDTWTAPNELMEIFSMDQ 494
           V +L    S++W A NEL + F ++Q
Sbjct: 268 VPMLQGFPSNSWVAINELQDSFWLEQ 293


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 693 GYRSRQSSSHEFCMRNGDSC 634
           GY S +  +  +C+  GDSC
Sbjct: 24  GYPSIRQGTTSYCLGCGDSC 43


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 721 PGCWGSWVRRLSEP 680
           P C G W  + SEP
Sbjct: 364 PNCCGKWSSQKSEP 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,333
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)