Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00438
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    29   4.3  
At5g44220.1 68418.m05410 F-box family protein similar to unknown...    28   7.4  
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    28   7.4  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    28   7.4  
At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identica...    27   9.8  

>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR class),
            putative domain signature NBS-LRR exists, suggestive of a
            disease resistance protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -1

Query: 678  QSSSHEFCMRNGDSCCSKSNSA*SLEIPLSEQVLLIALEVSDTFSEHMLKSGIDSSRNPN 499
            Q   HE+  RN  +   KS+    ++ PL+    L  LEV    S + L+   +  R PN
Sbjct: 915  QPDHHEYSYRNLQTLSIKSSCDTLVKFPLNHFANLDKLEVDQCTSLYSLELSNEHLRGPN 974

Query: 498  SPGPWRIS 475
            +    RI+
Sbjct: 975  ALRNLRIN 982


>At5g44220.1 68418.m05410 F-box family protein similar to unknown
           protein (pir||T06086)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 387 SEVYSNMDKKVDLLSLIESDTWTAPNELMEIFSMDQDYLDFSKSQFQISTY 539
           S+++S++ +  DL+ L  +++   P  L   F    D   FS  +  ++TY
Sbjct: 86  SKLWSSIIRSRDLMKLFLTESSARPGRLFFTFRRKDDCFLFSSEESSVATY 136


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 483 RISP*VHLAPSTCLTLSETTSPLFYPYWNTLHFSML 376
           RISP V++AP      S+    L Y Y+   +FSML
Sbjct: 390 RISPHVNVAPLRAYYFSKDEKLLVYDYYQGGNFSML 425


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 483 RISP*VHLAPSTCLTLSETTSPLFYPYWNTLHFSML 376
           RISP V++AP      S+    L Y Y+   +FSML
Sbjct: 390 RISPHVNVAPLRAYYFSKDEKLLVYDYYQGGNFSML 425


>At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identical
           to SP|Q9FLC8 Cytochrome P450 79A2 (EC 1.-.-.-)
           {Arabidopsis thaliana}
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 540 HMLKSGIDSSRNPNS-PGPWRISP*VHLAPSTCLTLSET 427
           H+L S +   RNP+    P +  P  HL+ +TC+ L+E+
Sbjct: 409 HVLISRMGIGRNPSVWDKPHKFDPERHLSTNTCVDLNES 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,674
Number of Sequences: 28952
Number of extensions: 333336
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)