Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00437
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 189 4e-49
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 188 1e-48
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 161 1e-40
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 151 1e-37
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 112 4e-26
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 60 3e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 46 8e-06
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 29 0.71
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 1.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 2.9
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 5.0
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 8.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 189 bits (460), Expect = 4e-49
Identities = 97/141 (68%), Positives = 106/141 (75%), Gaps = 1/141 (0%)
Frame = +2
Query: 89 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTT 268
+IGIDLGTTYSCVG + + VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 269 PCSTRRG*SGGNSTTPRF-SRMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 445
+ G P S MKHWPFKVI+ GKP +Q+E+KGETK F PEEISSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 446 KMKETAEAYLGSTVRDAVVTV 508
KM+ETAEAYLG V DAVVTV
Sbjct: 124 KMRETAEAYLGGKVTDAVVTV 144
Score = 131 bits (316), Expect = 1e-31
Identities = 87/198 (43%), Positives = 114/198 (57%), Gaps = 5/198 (2%)
Frame = +1
Query: 103 FGNNILMCWSMAARERGDHRERPGQPYYTIVRRVHGHGASHRRRSQEPGRLNPNNTVFDA 282
F NN + + A ++G+ R P +T R+ G A ++ +NP+NT+FDA
Sbjct: 19 FSNNRV---EIIANDQGN-RTTPSYVAFTDTERLIGDAAKNQVA------MNPHNTIFDA 68
Query: 283 KRLIGRKFDDPKIQQDEA-----LALQSDQRLRQTENTDRVQR*DETICARRN*QHGADK 447
KRLIGRKFDDP++Q D + + + + Q E + + +
Sbjct: 69 KRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRET 128
Query: 448 NEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 627
E L GK + + AYFNDSQRQATKDAG IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 129 AEA---YLGGKVTDAVVT-VPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLD 184
Query: 628 KNLKGERNVLIFDLGGGT 681
++ +GE NVLIFDLGGGT
Sbjct: 185 RSNQGESNVLIFDLGGGT 202
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+LTI+EG +FEVK+TAGD
Sbjct: 199 GGGTFDVSLLTIEEG-IFEVKATAGD 223
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 188 bits (457), Expect = 1e-48
Identities = 97/141 (68%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Frame = +2
Query: 89 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTT 268
+IGIDLGTTYSCVG + + VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 269 PCSTRRG*SGGNSTTPRF-SRMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 445
+ G P S MKHWPFKVI GKP IQ+EFKGETK F PEEISSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 446 KMKETAEAYLGSTVRDAVVTV 508
KM+E+AEA+LG V DAVVTV
Sbjct: 124 KMRESAEAFLGGKVTDAVVTV 144
Score = 126 bits (304), Expect = 3e-30
Identities = 88/199 (44%), Positives = 115/199 (57%), Gaps = 6/199 (3%)
Frame = +1
Query: 103 FGNNILMCWSMAARERGDHRERPGQPYYTIVRRVHGHGASHRRRSQEPGRLNPNNTVFDA 282
F NN + + A ++G+ R P +T R+ G A ++ +NP+NT+FDA
Sbjct: 19 FSNNRV---EIIANDQGN-RTTPSYVAFTDTERLIGDAAKNQVA------MNPHNTIFDA 68
Query: 283 KRLIGRKFDDPKIQQDEA----LALQSDQR-LRQTENTDRVQR*D-ETICARRN*QHGAD 444
KRLIGR+F+DP++Q D ++ D + L Q E + E I +
Sbjct: 69 KRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVL----LK 124
Query: 445 KNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL 624
E L GK + + AYFNDSQRQATKDAG IAGLNVLRIINEPTAAA+AYGL
Sbjct: 125 MRESAEAFLGGKVTDAVVT-VPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 625 DKNLKGERNVLIFDLGGGT 681
D++ + E NVLIFDLGGGT
Sbjct: 184 DRSNQHETNVLIFDLGGGT 202
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+LTI+EG +FEVK+TAGD
Sbjct: 199 GGGTFDVSLLTIEEG-IFEVKATAGD 223
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 161 bits (391), Expect = 1e-40
Identities = 81/141 (57%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Frame = +2
Query: 89 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTT 268
AIGIDLGTTYSCV VW+ NVEII NDQG RTTPS+VAFT+TERL+GDAAKNQ A
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 269 PCSTRRG*SGGNSTTPRFSR-MKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 445
+ G P + +KHWPFKVI++ G P I++ + GE K+F +EIS+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 446 KMKETAEAYLGSTVRDAVVTV 508
KMKE +EA L V AV+TV
Sbjct: 128 KMKEISEAKLNKRVEKAVITV 148
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGT 681
AYF+DSQR ATKDAGAIAGLNVLRIINEPTAAA+AYGLD +NVLIFDLGGGT
Sbjct: 150 AYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGT 206
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+L I +G +FEV +TAGD
Sbjct: 203 GGGTFDVSLLKI-QGGVFEVLATAGD 227
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 151 bits (365), Expect = 1e-37
Identities = 75/140 (53%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Frame = +2
Query: 92 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTTP 271
IGIDLGTTYSCV V ++G VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 272 CSTRRG*SGGNSTTPRFSR-MKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTK 448
+ G ++ +K +PF ++ND +P +++ G+ K+F PEEIS+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 449 MKETAEAYLGSTVRDAVVTV 508
MK+TAEAYLG V AVVTV
Sbjct: 158 MKQTAEAYLGKPVTHAVVTV 177
Score = 108 bits (259), Expect = 1e-24
Identities = 72/182 (39%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = +1
Query: 139 ARERGDHRERPGQPYYTIVRRVHGHGASHRRRSQEPGRLNPNNTVFDAKRLIGRKFDDPK 318
A ++G+ R P +T R+ G A ++Q P NP NT+FD KRLIGRKFD+
Sbjct: 61 ANDQGN-RITPSYVAFTEDERLVGEAA----KNQAPS--NPENTIFDIKRLIGRKFDEKT 113
Query: 319 IQQD-EALALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEGDGGSLSGKYSAGC 495
+ +D ++ + V + K + + GK
Sbjct: 114 MAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHA 173
Query: 496 GSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGG 675
AYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AYGLDK E++++++DLGG
Sbjct: 174 VVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKT-DTEKHIVVYDLGG 232
Query: 676 GT 681
GT
Sbjct: 233 GT 234
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+L+ID G +FEV +T+GD
Sbjct: 231 GGGTFDVSLLSIDNG-VFEVLATSGD 255
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 112 bits (270), Expect = 4e-26
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Frame = +1
Query: 253 LNPNNTVFDAKRLIGRKFDDPKIQQDEALALQSDQRLRQTENTDR-VQR*DETICARRN* 429
+NP NT F KRLIGR+F +P++Q+D + ++ + N D ++ +T +
Sbjct: 108 INPENTFFATKRLIGRRFKEPEVQRD---IKEVPYKIVEHSNGDAWLEARGKTYSPSQIG 164
Query: 430 QHGADKNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAA 609
K + GK AYFNDSQRQATK AGAIAGLNVLR++NEPTAAA
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAA 224
Query: 610 LAYGLDKNLKGERNVLIFDLGGGT 681
LAYGLDK K + V +FDLGGGT
Sbjct: 225 LAYGLDK--KNDAIVAVFDLGGGT 246
Score = 101 bits (242), Expect = 1e-22
Identities = 59/145 (40%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA* 256
K P IGIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 257 TLTTPCSTRRG*SGGNSTTPRFSR-MKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISS 433
+ G P R +K P+K++ + +E +G+T ++P +I
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIV-EHSNGDAWLEARGKT--YSPSQIGG 165
Query: 434 MVLTKMKETAEAYLGSTVRDAVVTV 508
+L+KM+ETA YLG V++AVVTV
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTV 190
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTTP 271
+GID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 8 VGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNT 67
Query: 272 CSTRRG*SGGNSTTPRFSRMK--HWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 445
+ + +G P ++ K+ G ++++ E F+ ++ + T
Sbjct: 68 VGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFT 127
Query: 446 KMKETAEAYLGSTVRDAVVTV 508
K+K AEA L +V D V+++
Sbjct: 128 KIKAIAEAELIGSVSDVVISI 148
Score = 52.4 bits (120), Expect = 7e-08
Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Frame = +1
Query: 256 NPNNTVFDAKRLIGRKFDDPKIQQDEALALQSDQRLRQTENT--DRVQR*DETICARRN* 429
N NTV KRL GR +DDP+I+ E+ + + +L + + +VQ +E A N
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIKDIESNFISA--KLTEVDGFVGAKVQYLNEET-AFSNI 119
Query: 430 QHGA---DKNEGDG-GSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEP 597
Q A K + L G S S A+F D QR+A +A IAGLN LR++N+
Sbjct: 120 QLIAAYFTKIKAIAEAELIGSVSDVVIS-IPAWFTDIQRRALLEAANIAGLNPLRLMNDN 178
Query: 598 TAAALAYGLDK----NLKGERNVLIFDLG 672
AAAL YG+ K + R V I D G
Sbjct: 179 AAAALTYGITKTDLPEPESPRRVAIVDFG 207
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 45.6 bits (103), Expect = 8e-06
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 8/229 (3%)
Frame = +1
Query: 22 FSTSYILFIVKEVSTVINIQNASYRN*FGNNILMCWSMAARERGDHRERPGQPYYTIVRR 201
FS ++I+ +E TVI I + + N + A E G+ R+ P Y
Sbjct: 11 FSENFIMADSEEYKTVIGISFGNQNSSIAFNRDGKTDVLANEEGN-RQIPSILSY----- 64
Query: 202 VHGHGASHRRRSQEPGRL--NPNNTVFDAKRLIGRKFDDPKIQQDEALA----LQSDQRL 363
HG Q G+L N +N+V + + L+G+ D+ + A ++
Sbjct: 65 ---HGDQEYHGVQARGQLVRNADNSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGF 121
Query: 364 RQTENTDRVQR*DETICARR--N*QHGADKNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQ 537
+ T D E I + +H E L K + GC YF D+QR+
Sbjct: 122 KITVQEDEESDPKEKILTAHEASVRHLRRLTESAEDFLGTKVN-GCVMSVPVYFTDAQRK 180
Query: 538 ATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTS 684
A + A AGL VL++I++P A LA + + ++ V++ + G S
Sbjct: 181 ALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRS 229
Score = 44.8 bits (101), Expect = 1e-05
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Frame = +2
Query: 92 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TLTTP 271
IGI G S + + G +++AN++GNR PS +++ + G A+ Q+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 272 CSTRRG*SG--GNSTTPRFSRMKHWPFKVINDCG-KPKIQIEFKGETKR--FAPEEISSM 436
+ R G + T P V G K +Q + + + K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEASVR 146
Query: 437 VLTKMKETAEAYLGSTVRDAVVTV 508
L ++ E+AE +LG+ V V++V
Sbjct: 147 HLRRLTESAEDFLGTKVNGCVMSV 170
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 77 FKMPAIGIDLGTTYSCVGVWQHG-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN 244
F + ID GT ++ + + G +EI+ R S VAF ER+ G A N
Sbjct: 20 FASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASN 76
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 299 GNSTTPRFSRMKHWPFKVIND 361
GN+T PR +R ++W F +D
Sbjct: 240 GNTTAPRKNRHRYWSFAGFSD 260
Score = 20.6 bits (41), Expect(2) = 1.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 131 VWQHGNVEIIANDQGNRTTP 190
V + ++ I+++D GN T P
Sbjct: 226 VADNDDLSIVSSDSGNTTAP 245
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 550 AGAIAGLNVLRIINEPTAAALAYGLDKNLKGE 645
A AI +NV R+ N A L G+D N+K +
Sbjct: 1049 ADAIVPVNVRRVTNRFVAVKLDCGIDGNIKAD 1080
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 556 AIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFD 666
A AGL + +I+N T A YG N+ G +V++++
Sbjct: 388 AAAGLPLFQILNGTTVIAQGYG-PLNILGNNSVVLYN 423
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 622 LDKNLKGERNVLIFDLGGGTST 687
L N+ G+R VL+F +GG T T
Sbjct: 528 LKTNVPGKRRVLVFFIGGCTYT 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,963
Number of Sequences: 5004
Number of extensions: 59493
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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