Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00437
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 200 7e-52
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 190 1e-48
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 3e-44
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 155 4e-38
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 77 2e-14
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 55 7e-08
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 44 1e-04
SB_20927| Best HMM Match : Acyl_transf_1 (HMM E-Value=3.8e-07) 34 0.11
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.00
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 1.7
SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62) 30 1.7
SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20) 29 3.0
SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_23837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 28 7.0
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 28 7.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 200 bits (489), Expect = 7e-52
Identities = 102/144 (70%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*T 259
K PA+GIDLGTTYSCVGV+QHG VEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 3 KTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMN 62
Query: 260 LTTPCSTRRG*SGGNSTTPRFSR-MKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSM 436
+ G P +R M HWPF VI + +PKIQ+EFKGE K F PEEISSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 437 VLTKMKETAEAYLGSTVRDAVVTV 508
VLTKMKETAEAYLG+ V DAVVTV
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTV 146
Score = 123 bits (297), Expect = 1e-28
Identities = 75/146 (51%), Positives = 90/146 (61%), Gaps = 3/146 (2%)
Frame = +1
Query: 253 LNPNNTVFDAKRLIGRKFDDPKIQQDEALALQSDQRLRQTENTD-RVQR*DE--TICARR 423
+NP NTVFDAKRLIGRKFDDP + +D + +R+ E +V+ E +
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARD--MTHWPFHVIREGERPKIQVEFKGEKKSFFPEE 118
Query: 424 N*QHGADKNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTA 603
K + + G AYF+DSQRQATKDAG IAGLNVLRIINEPTA
Sbjct: 119 ISSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTA 178
Query: 604 AALAYGLDKNLKGERNVLIFDLGGGT 681
AA+AYGLDK + ERNVLI+DLGGGT
Sbjct: 179 AAIAYGLDKKVGVERNVLIYDLGGGT 204
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVSVLTI++G +FEVKSTAGD
Sbjct: 201 GGGTFDVSVLTIEDG-IFEVKSTAGD 225
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 190 bits (463), Expect = 1e-48
Identities = 99/144 (68%), Positives = 108/144 (75%), Gaps = 1/144 (0%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*T 259
K PAIGIDLGTTYSCVGV+Q+G VEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVALN 62
Query: 260 -LTTPCSTRRG*SGGNSTTPRFSRMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSM 436
T +R S MK WPFK+I+D KPKIQ+E+KGE K FA EEISSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 437 VLTKMKETAEAYLGSTVRDAVVTV 508
VL KMKETAEAYLG V AV+TV
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITV 146
Score = 140 bits (338), Expect = 1e-33
Identities = 86/184 (46%), Positives = 109/184 (59%), Gaps = 3/184 (1%)
Frame = +1
Query: 139 ARERGDHRERPGQPYYTIVRRVHGHGASHRRRSQEPGRLNPNNTVFDAKRLIGRKFDDPK 318
A ++G+ R P +T R+ G A ++ LNP NT+FDAKRLIGR++DD
Sbjct: 30 ANDQGN-RTTPSYVGFTDTERLVGDAAKNQVA------LNPENTIFDAKRLIGRRYDDAT 82
Query: 319 IQQDEAL---ALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEGDGGSLSGKYSA 489
+Q D L + SD + + + +R +T A K + + G+
Sbjct: 83 VQSDMKLWPFKIISDNNKPKIQVEYKGER--KTFAAEEISSMVLGKMKETAEAYLGQKVT 140
Query: 490 GCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDL 669
AYFNDSQRQATKDAG IAGLNVLR+INEPTAAALAYGLDK+L GE+NVLIFDL
Sbjct: 141 SAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDL 200
Query: 670 GGGT 681
GGGT
Sbjct: 201 GGGT 204
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+LTID+GSLFEVKSTAGD
Sbjct: 201 GGGTFDVSILTIDDGSLFEVKSTAGD 226
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 175 bits (426), Expect = 3e-44
Identities = 99/169 (58%), Positives = 110/169 (65%), Gaps = 26/169 (15%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*T 259
K PAIGIDLGTTYSCVGV+QHG VEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVAMN 62
Query: 260 LTTPCSTRRG*SGGNSTTPRF-SRMKHWPF-------------------------KVIND 361
T + G P MKHW F +V+N+
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 362 CGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 508
G+PK+++E+KGETK F EEISSMVL KMKETAEAYLG V DAVVTV
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTV 171
Score = 105 bits (253), Expect = 3e-23
Identities = 50/57 (87%), Positives = 53/57 (92%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGT 681
AYFNDSQRQATKDAG I+GLNVLRIINEPTAAA+AYGLDK + ERNVLIFDLGGGT
Sbjct: 241 AYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGT 297
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2
Query: 422 EISSMVLTKMKETAEAYLGSTVRDAVVTV 508
+ISSMVL KMKETAEAYLG V DAVVTV
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTV 239
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 511 AYFNDSQRQATKDAG 555
AYFNDSQRQATKDAG
Sbjct: 173 AYFNDSQRQATKDAG 187
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVSVL+I++G +FEVKST GD
Sbjct: 294 GGGTFDVSVLSIEDG-IFEVKSTHGD 318
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 155 bits (376), Expect = 4e-38
Identities = 85/141 (60%), Positives = 100/141 (70%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVA*TL-T 265
IGIDLGTTYSCVGV+++G VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 266 TPCSTRRG*SGGNSTTPRFSRMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 445
T +R T + +K +PFKV++ KP +Q++ K E K FA EEIS+MVLT
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 446 KMKETAEAYLGSTVRDAVVTV 508
KMKETAEAYLG V AVVTV
Sbjct: 824 KMKETAEAYLGKKVTHAVVTV 844
Score = 125 bits (302), Expect = 3e-29
Identities = 70/143 (48%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 256 NPNNTVFDAKRLIGRKFDDPKIQQD-EALALQSDQRLRQTENTDRVQR*DETICARRN*Q 432
NP NTVFDAKRLIGR +DD +Q D + + + ++ +V+ +T A
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 433 HGADKNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAL 612
K + + GK AYFND+QRQATKDAGAIAGL V+RIINEPTAAA+
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAI 879
Query: 613 AYGLDKNLKGERNVLIFDLGGGT 681
AYG+DK +GE+N+L+FDLGGGT
Sbjct: 880 AYGMDKK-EGEKNILVFDLGGGT 901
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 669 GWRNFDVSVLTIDEGSLFEVKSTAGD 746
G FDVS+LTID G +FEV +T GD
Sbjct: 898 GGGTFDVSLLTIDNG-VFEVVATNGD 922
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQ--HGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K IGIDLGTTYSCVG +Q G ++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 254 *TLTTPCSTRRG*SGGNSTTPRFSRM-KHWPFKVIND-CGKPKIQIEFKGETKRFAPEEI 427
+ G T + K + F+V D G + KG PEEI
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 428 SSMVLTKMKETAEAYLGSTVRDAVVTV 508
V+ K++ AE L +TV AV++V
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSV 176
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGT 681
A F+ QR AT A ++AG+ VLR+INEPTAAALAYGL K +G NV++ DLGGGT
Sbjct: 178 AEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGT 233
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 56.0 bits (129), Expect = 3e-08
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 256 NPNNTVFDAKRLIGRKFDDPKIQQD------EALALQSDQRLRQTENTDRVQR*D-ETIC 414
N NT+ KR IGRKF DP +Q++ + + L +D Q + + + E +
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 415 ARRN*QHGADKNEGDGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINE 594
A K + +L K + C +Y+ D QR+ DA A AGLN LR++N+
Sbjct: 178 AML---FTRLKTTAEI-ALKTKVT-DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMND 232
Query: 595 PTAAALAYGL---DKNLKGERNVLIFDLG 672
TA +LAYG+ D RNV+ D+G
Sbjct: 233 TTAVSLAYGIYKQDLPTDKPRNVVFVDIG 261
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +2
Query: 83 MPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 247
M +G D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 1 MSVVGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 335 HWPFKVIN-DCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 508
H P+KV+ IQ+++ G+ + F+PE++ +M+ T++K TAE L + V D V++V
Sbjct: 145 HLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISV 203
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 54.8 bits (126), Expect = 7e-08
Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 26/73 (35%)
Frame = +1
Query: 511 AYFNDSQRQATKDAGAIAGLN------------------------VLRIINEPTAAALAY 618
A+FND+QRQATKDAG IAGL+ VLRIINEPTAAA+AY
Sbjct: 47 AHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAY 106
Query: 619 GLDK--NLKGERN 651
GLDK K ERN
Sbjct: 107 GLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +2
Query: 377 IQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 508
I +E GE + FAPE+IS++VL ++K AEA+LG V+ AV+TV
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITV 45
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Frame = +1
Query: 514 YFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL--DKNLKG--ERNVLIFDLGGGT 681
+FN ++R+A A + GLNVL+I+N TA AL YGL K+ E++ + +D+G +
Sbjct: 115 FFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASS 174
Query: 682 STCP----S*PSTRDR-CSK*SPQ 738
+ S T+DR S+ +PQ
Sbjct: 175 TVATIVGYSMTKTKDRGISETAPQ 198
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 410 FAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 508
F PEE+ M+L + E + ++D V+TV
Sbjct: 80 FTPEELMGMILNHSRFIGEQFADHPIKDVVLTV 112
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 143 GNVEIIANDQGNRTTPSYVAFTDTERLI 226
GN IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_20927| Best HMM Match : Acyl_transf_1 (HMM E-Value=3.8e-07)
Length = 426
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = -2
Query: 719 QRSLVDGQDGHVEVPPPRSKIRTFLSPLRFLSRPYASAAAVGSLMMRSTFNPAMAPASLV 540
Q +L + D +VE+ PP + + ++ RPY S V L+ R TF+ A+ PAS+V
Sbjct: 348 QPALEEALD-NVEIRPPAFPVYSNVT-----GRPYGSVEEVRRLVWRCTFSSAVGPASIV 401
Query: 539 A 537
A
Sbjct: 402 A 402
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 152 EIIANDQGNRTTPSYVAFT-DTERL 223
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 463 GSLSGKYSAGCGSHSSAYFNDSQRQATKD 549
G +G A C S SSAYF+DS + ++D
Sbjct: 241 GRKAGNQGASCRSSSSAYFSDSAPEISQD 269
>SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62)
Length = 581
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 463 GSLSGKYSAGCGSHSSAYFNDSQRQATKD 549
G +G A C S SSAYF+DS + ++D
Sbjct: 310 GRKAGNQGASCRSSSSAYFSDSAPEISQD 338
>SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)
Length = 376
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 228 PMRRSVSVNATYDGVVRLPWSF-AMISTFPCCHTPTH-EYVVPKSIPIAGILNINYC 64
P+R ++ N Y GV+ L W F A+I++ +H EY + + IL ++ C
Sbjct: 153 PLRHRMTTNRMYSGVICLTWVFAALIASLATYIKTSHVEYDIYAAWMSVSILLVSLC 209
>SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 277 DAKRLIGRKFDDPKIQQDEALALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEG 456
D + G + D+ + +E+ +SD E +D + E + + G+D E
Sbjct: 65 DGEESDGEESDEEESDGEESDGEESDGEESDGEESDGEESDGEESDGEESDEEGSDGEES 124
Query: 457 DGGSLSGKYSAGCGS 501
DG G+ S G GS
Sbjct: 125 DGEESDGEESDGKGS 139
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 277 DAKRLIGRKFDDPKIQQDEALALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEG 456
D + G + D + +E+ +SD+ E +D + E + + + G+D E
Sbjct: 90 DGEESDGEESDGEESDGEESDGEESDEEGSDGEESDGEESDGEESDGKGSDEEGSDGEES 149
Query: 457 DGGSLSGKYSAGCGS 501
DG G+ S G GS
Sbjct: 150 DGEESDGEESDGEGS 164
>SB_23837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 73 NIQNASYRN*FGNNILMCWSMAARERGDHRERPGQPYYTI 192
NI+ YR FG + C+ + +R R G P++ +
Sbjct: 117 NIKPLLYRGRFGGTVFGCYFWRSMHHCKYRHRSGSPFHNV 156
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 674 PPRSKIRTFLSPLRFLSRPYASAAAVGSLMMRSTFNPAMAPA 549
PP K+ SPL+ L R + A V LMM++ P P+
Sbjct: 384 PPSPKLSKSPSPLQKLRRSPSPAEMVQQLMMQTQMQPRRPPS 425
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 301 KFDDPKIQQDEALALQSDQRLRQTENTDRVQ 393
K ++PK +Q+E LQ + R RQ E DRV+
Sbjct: 994 KQNEPKDRQNELRDLQDEPRDRQNEPRDRVK 1024
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,749,467
Number of Sequences: 59808
Number of extensions: 451121
Number of successful extensions: 1431
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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