Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00437
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 457 DGGSLSGKYSAGCGSHSSAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYG 621
           D  SL  K      S ++      Q +A K A  +   N   II+EPT     YG
Sbjct: 329 DPDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 657 YLRSGWRNFDVSVLTIDEGSLFEVKSTA 740
           ++R+   N D+SVL   + S   VK TA
Sbjct: 38  FVRASLSNLDMSVLECADRSAPRVKKTA 65


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 657 YLRSGWRNFDVSVLTIDEGSLFEVKSTA 740
           ++R+   N D+SVL   + S   VK TA
Sbjct: 128 FVRASLSNLDMSVLECADRSAPRVKKTA 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,664
Number of Sequences: 438
Number of extensions: 4783
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)