Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00431
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   1.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    24   8.8  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    24   8.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    24   8.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.8  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    24   8.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.8  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    24   8.8  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 361 GTLGLSLTFITVSSSPCSAILRS*LLSDYVL*FPLGNSIFSGTASPRXFAQSA 203
           GT+   +TF T +S  C  I      S+     P  +S+FS +A    + Q A
Sbjct: 272 GTVYPGVTFTTKTSPACQLIYDLQFCSEVAYAVPGNSSLFSASALAEWYDQQA 324


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 265 FPLGNSIFSGTASPR 221
           FP  NSI +GTASP+
Sbjct: 163 FPSSNSITTGTASPK 177


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 258 WVIQFFQELLRHAXLHKVHARYKA 187
           W  + F   + +  +HKVH RY A
Sbjct: 152 WAHRLFHYGIFYRFIHKVHHRYSA 175


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 157 YLCRCIIYF 131
           YLCRC +YF
Sbjct: 43  YLCRCCVYF 51


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 SDSSYDLRIAEQGDDETVMKVRLSP 353
           +DS+YDL+  +   DE V+ V+  P
Sbjct: 53  NDSNYDLKPEDDEVDEEVVPVKKKP 77


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 297 LRIAEQGDDETVMKVRLSPRVPANP 371
           L  +EQG++  + K   SPR+P+ P
Sbjct: 263 LESSEQGNNLLINKAFTSPRLPSPP 287


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 285 CLIMFSSSPWVIQFFQEL 232
           CL++   SP V+QF QE+
Sbjct: 223 CLLLAIPSPIVLQFLQEI 240


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 335 HHSLVISLLCNPQVIAAV*LCSLVPLG*FNFFRNC 231
           +H L  +LL NP +I++    SL+  G F + ++C
Sbjct: 531 YHELFCALLKNPDIISSSVKQSLLLDGFFRWSQHC 565


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 37  KRVKYYLRNC*LQNLFNLIKKKLHEANKLYLKSK*YNDIGTMEEENTPN 183
           K++K Y+RN     +   I+KK  E + L + ++   +   + E+  P+
Sbjct: 250 KQLKQYMRNVENAKMIEGIRKKRSERDTLNVSTEFPEETKDLSEDTKPS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,997
Number of Sequences: 5004
Number of extensions: 26911
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)