Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00431
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9282| Best HMM Match : ComC (HMM E-Value=7.5)                       30   0.52 
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  

>SB_9282| Best HMM Match : ComC (HMM E-Value=7.5)
          Length = 196

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 76  NLFNLIKKKLHEANKLYLKSK*YNDIGTMEEENTPNVSLIS 198
           N+F++ K+K       Y++S+      T+EEENTP + L +
Sbjct: 147 NVFDIKKQKNTTVECFYVQSQEIVAAATIEEENTPKIDLFN 187


>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 365 GWYSGAEPDLHHSLVISLLC 306
           GW  G+ P LH+SLV   +C
Sbjct: 317 GWMVGSHPSLHYSLVTRKVC 336



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 365 GWYSGAEPDLHHSLVISLLC 306
           GW  G+ P LH+SLV   +C
Sbjct: 449 GWMVGSHPSLHYSLVTRKVC 468


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 330 QSRHLLALQSSGH--SCCLIMFSSSPW 256
           +SRH  AL  + H  SCCL +F+ SP+
Sbjct: 34  RSRHFGALTFTSHRMSCCLNIFTGSPF 60


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 206 CMHDIRLTLGVFSSSIVPMSLYYL 135
           C++DI L  G+F++ I  M+ Y+L
Sbjct: 38  CIYDIGLRSGIFTTVIPKMTFYFL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,958
Number of Sequences: 59808
Number of extensions: 185121
Number of successful extensions: 365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)