Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00431
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion transpo...    29   1.1  
Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical p...    26   7.5  

>Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical
           protein F52D10.1 protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -2

Query: 367 LAGTLGLSLTFITVSSSPCSAILRS*LLSDYVL*FPLGNSIFS 239
           L GT  LS+T I+  SSP  +  +  L+SDY L  P+   +FS
Sbjct: 428 LFGTTWLSMTIISFRSSPYLSRWKRDLVSDYAL--PIAVLVFS 468


>AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion
           transporter ABTS-2 protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -2

Query: 367 LAGTLGLSLTFITVSSSPCSAILRS*LLSDYVL*FPLGNSIFS 239
           L GT  LS+T I+  SSP  +  +  L+SDY L  P+   +FS
Sbjct: 428 LFGTTWLSMTIISFRSSPYLSRWKRDLVSDYAL--PIAVLVFS 468


>Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical
           protein F17C11.8 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = -1

Query: 371 RIGWYSGAEPD----LHHSLVISL 312
           RI W   ++PD    LHHSLVIS+
Sbjct: 46  RIIWADSSDPDRRLVLHHSLVISM 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,841
Number of Sequences: 27780
Number of extensions: 149473
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)