Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00430
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UY76 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_Q05FR9 Cluster: Glutaminyl-tRNA synthetase; n=1; Candid...    35   2.5  

>UniRef50_Q0UY76 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 323

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 451 FINSWSSIQLWRVEI*RRISMYMKCPSQFDYGG 549
           F +  ++I+ WR  I RR   +  CPS+FDY G
Sbjct: 95  FCSGTTTIKAWRKPISRRAKRHRACPSEFDYAG 127


>UniRef50_Q05FR9 Cluster: Glutaminyl-tRNA synthetase; n=1;
           Candidatus Carsonella ruddii PV|Rep: Glutaminyl-tRNA
           synthetase - Carsonella ruddii (strain PV)
          Length = 391

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 677 FYFVNCEWYYYLFIKKSFYEKISKLTL 597
           FYF N  + ++ FIKK++Y+K+ K+ L
Sbjct: 312 FYFFNIRFNFFFFIKKTYYKKLKKIFL 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,226,456
Number of Sequences: 1657284
Number of extensions: 14682619
Number of successful extensions: 27484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27480
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)