Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00430
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.72 
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.72 
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    27   3.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.8  

>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 153 HIDVPRNEHVRDIHFKNVTLLRLTNILRARHYF*FDMFLLYRYMDGPSLVP 1
           H+ +     + D HF++  +L  TN+L  ++Y  +    L + M+GP L P
Sbjct: 687 HVKLKMGMQIDDSHFRS--MLAETNVLATKNYQKWRWDTLVQIMEGPLLSP 735


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 207 YSVRVQSTAERTQSSKCSHIDVPRNEHVRDIHFKNVTLL 91
           YS+  QS  ER Q   CSH+D    E + ++  K+  L+
Sbjct: 81  YSIHFQSVLERIQLIPCSHVD--DLEKIVEVRLKHAKLI 117


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 68  ARKILVNLNKVTFLKCMSRTCSFRGTSM*EHLLLCVLSAVLCTRTEYSGVIII 226
           A+  +  + K  FL C S        S+  H LL V+SA+L    E   V +I
Sbjct: 47  AQSDIPKVGKCLFLPCRSLEFRASANSLSVHFLLNVISAILSMLIERYAVEVI 99


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 KLRILWLFLEIACAKELSTKKSTSNKNVLPV 418
           ++RI+ L  E+A  KE+  K ++S KN   V
Sbjct: 221 RVRIVGLAAEVAICKEICNKTNSSTKNAYGV 251


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 374 LSTKKSTSNKNVLPVFSKLIN 436
           +STK S+SNKN+    SKL++
Sbjct: 306 VSTKNSSSNKNLRSSLSKLLS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,455
Number of Sequences: 5004
Number of extensions: 68705
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)