Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00430
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0124 + 12116278-12116374,12116595-12116881                       29   5.3  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    29   5.3  
06_02_0125 + 12122812-12122911,12123647-12123993                       28   9.2  

>06_02_0124 + 12116278-12116374,12116595-12116881
          Length = 127

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 335 ILWLFLEIACAKELSTKKSTSNKNVLP 415
           +L+ FL++A A+ELS    +  KNV P
Sbjct: 15  LLFFFLDVAHARELSEASESEGKNVKP 41


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 181 RCTLHAHRV*RSYNN*RIEWMKGLRPF*DI*VFTLNEGVMCL*TMLDLQTPDFM 342
           +C   AHR+   Y++   EW +GLR +    VF     ++ L   L L TP FM
Sbjct: 72  QCLEVAHRIVFGYDHLTWEWKRGLRSYLHPLVFAALYKILAL---LHLDTPWFM 122


>06_02_0125 + 12122812-12122911,12123647-12123993
          Length = 148

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 335 ILWLFLEIACAKELSTKKSTSNKNVLPVFSKLINCIISPSSTHGHPSNYGG 487
           +L+ FL++A A+EL+    +  KNV P     +         HG    YGG
Sbjct: 16  LLFFFLDVAHARELAEASESEGKNVKPTGRSGVE-DQKWGGAHGGGYGYGG 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,492,105
Number of Sequences: 37544
Number of extensions: 382875
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)