Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00430
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe...    28   6.2  
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel...    28   6.2  
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel...    28   6.2  
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel...    28   6.2  
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel...    28   6.2  
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag...    28   6.2  
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu...    28   6.2  
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu...    28   6.2  
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu...    28   6.2  
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen...    28   6.2  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    28   8.2  
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    28   8.2  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    28   8.2  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      28   8.2  

>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform f protein.
          Length = 1418

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform c protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform a protein.
          Length = 1837

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform d protein.
          Length = 1885

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1404 SFLLLVGFFVLNMFVGVVVENFHKCK 1429


>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform e protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1363 SFLLLVGFFVLNMFVGVVVENFHKCK 1388


>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
            sensitive calciumchannel alpha1 subunit isoform D
            protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1363 SFLLLVGFFVLNMFVGVVVENFHKCK 1388


>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform C protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform B protein.
          Length = 1885

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1404 SFLLLVGFFVLNMFVGVVVENFHKCK 1429


>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform A protein.
          Length = 1837

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
            calcium channelalpha13 subunit protein.
          Length = 1837

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 408  TFLLLVLFFVDNSFAHAISKNSHKIR 331
            +FLLLV FFV N F   + +N HK +
Sbjct: 1356 SFLLLVGFFVLNMFVGVVVENFHKCK 1381


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 410 LPVFSKLI--NCIISPSSTHGHPS 475
           LPV   +    C I PSS HGHPS
Sbjct: 849 LPVLLSIFVRGCCIIPSSPHGHPS 872


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 389 STSNKNVLPVFSKLIN--CIISPSSTHGHPSNY 481
           S +N +VLP+F+ L+N  C   P   +G P NY
Sbjct: 217 SVTNPHVLPIFTSLLNIVCAYDPVG-YGLPYNY 248


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 389 STSNKNVLPVFSKLIN--CIISPSSTHGHPSNY 481
           S +N +VLP+F+ L+N  C   P   +G P NY
Sbjct: 217 SVTNPHVLPIFTSLLNIVCAYDPVG-YGLPYNY 248


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 389 STSNKNVLPVFSKLIN--CIISPSSTHGHPSNY 481
           S +N +VLP+F+ L+N  C   P   +G P NY
Sbjct: 217 SVTNPHVLPIFTSLLNIVCAYDPVG-YGLPYNY 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,124
Number of Sequences: 27780
Number of extensions: 379708
Number of successful extensions: 781
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)