Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00429
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 36 0.007
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 32 0.11
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 31 0.14
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 29 1.0
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 28 1.3
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.8
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 27 2.4
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 2.4
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 26 5.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 5.4
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 26 7.2
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 26 7.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.2
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 26 7.2
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.2
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 9.5
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 9.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 9.5
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 35.9 bits (79), Expect = 0.007
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Frame = +1
Query: 205 NVMLTNCSQLFKL*TCIVDCIECYSSKIMFENILSALND----ENED----VKCENLMDF 360
NV+ S K+ C ++C+ K +FE I S + ENED +CE F
Sbjct: 211 NVLDHVVSDYPKVNVCYINCMTINEPKAIFEKIHSKIVKEEILENEDHHINFQCELESHF 270
Query: 361 INCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLLK 471
N L Y P++IV D ++ L +Q +L L +
Sbjct: 271 TQSANEL---YNPVIIVLDEMDHLIAREQQVLYTLFE 304
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 98 VVCRENQLNDLFNLFGDDNEP-LPCSIFISGSMATGKTLCLQTVLNYL 238
VV REN+ + + + F + ++++SG+ TGKT+ L VL+++
Sbjct: 169 VVGRENEKSIVESFFRQHLDANAGGALYVSGAPGTGKTVLLHNVLDHV 216
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 80 DEIYSKVVCRENQLNDLFNLFGDDNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKHV 253
DE+ V CRE+Q+ L L + + +P SI + G +T KT L+T + ++V
Sbjct: 8 DELKKNVFCREDQIKKLSCLLFNKDCRVP-SIVLYGVASTAKTFLLRTAFDLSKEENV 64
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 92 SKVVCRENQLNDLF-NLFGDDNEPLPCSIFISGSMATGKTLCLQTVL 229
S + CR+N+ + +F NL E ++ISG+ TGKT + V+
Sbjct: 336 STLQCRDNEFSTIFSNLESAIEEETGACLYISGTPGTGKTATVHEVI 382
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 551 TEFEIKIFEY*MRHHIVQMFNLQNSLS 471
TEF +K+ ++ + H+V F L N+LS
Sbjct: 676 TEFVVKVVKHVFKDHLVVQFQLHNTLS 702
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 345 FTFHVLVFIVEGRQNVLEHYL 283
+ FH L F + GRQ L HYL
Sbjct: 655 YVFHYLPFFIMGRQLFLHHYL 675
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 149 DNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKH 250
D E PC+I + G +GKT +Q + +L K+
Sbjct: 3 DKEKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKN 36
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 627 KSFVQHLLNHFDIEDETTELIEKPELFANFLNAFLSVSI 743
+SF + L H D+ +ET+ EK F+ NA +VSI
Sbjct: 338 ESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSI 376
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 170 SIFISGSMATGKTLCLQTVLNYLSYKH 250
SIF +GS TGK++ L+ ++ L K+
Sbjct: 327 SIFFTGSAGTGKSVLLRKIIEVLKSKY 353
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 137 LFGDDNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKHVLSTVSSVIRQ 283
LF P P I + G TGKTL + V ++ K + + S ++++
Sbjct: 170 LFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQK 218
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 247 TCIVDCIECYSSKIMFENILSALNDENEDVKCENLMDF 360
T + + Y S++ ENIL + ENE E + DF
Sbjct: 300 TTLSEISPIYDSELAIENILESKCFENEQAIIEGVKDF 337
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 164 PCSIFISGSMATGKTLCLQTVLN 232
P I + G TGKTLC + V N
Sbjct: 213 PKGIMLYGPPGTGKTLCARAVAN 235
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 319 DENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLLKLREFCKLNI 498
D+NE + E + F+ CL++ N + ++F+ + M++ LL +L+E K N+
Sbjct: 75 DDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG--ELQESSKTNV 132
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 501 HDMVTHLIFENFNFKFGVREPIKLYFPNYNKEELFRII 614
H+++ I + + G+ E +LYF ++N E +F ++
Sbjct: 1816 HELIRAAILWHEQWHEGLEEASRLYFGDHNIEGMFAVL 1853
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 277 SSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYE 396
S+ I ++L +NDEN C L+D ++ ++L +E
Sbjct: 46 STAIREISLLKEVNDENNRSNCVRLLDILHAESKLYLVFE 85
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 86 IYSKVVCRENQLNDLFNLFGDDNEPLPCSIFISGSM 193
+++K + ND F +F DD + + C IF S+
Sbjct: 308 VFAKNPSKTPPCNDNFKIFSDDIKLIGCKIFAGVSL 343
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 265 IECYSSKIMFENILSALNDENEDVKCENLMDFINCLNR--LQNNYEPIV--IVFDRVERL 432
++ + I + + SAL +++ V EN + F+N R + + + + ++D ++ +
Sbjct: 600 MQSFLEAIQKKKLASALASQDQLV-LENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQ-I 657
Query: 433 RNMDQNLLPVLLKLREF 483
R D N+ P LL LR+F
Sbjct: 658 RLKDDNVFPTLLLLRKF 674
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 609 IIFLYQKSFVQHLLNHFDI 665
+ FLY SF+ H+ ++D+
Sbjct: 157 VSFLYNSSFISHIYGNYDV 175
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Frame = +3
Query: 552 VREPIKLYFPNYNKEELFRII--FLYQKSFVQHLL---NHFDIEDETTELIEKPELFANF 716
++ ++ YFP +KEE+F +I F+Y ++V +L ++F + D + +++ L+
Sbjct: 1011 LKNSLQRYFPAAHKEEIFGVIGKFVYW-AYVAPVLVSPDNFKLVDGSITALQRKNLYT-- 1067
Query: 717 LNAFLS 734
L++ LS
Sbjct: 1068 LSSILS 1073
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 277 SSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNM-DQNL 453
S+ I+ E + LND N+DVK N + + N + D + NM D +
Sbjct: 131 STDILPEEVQLVLNDLNDDVKSANSANLQPITTNVVNEKDAYRKDIDELPEPSNMKDYSE 190
Query: 454 LPV 462
+PV
Sbjct: 191 IPV 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,260
Number of Sequences: 5004
Number of extensions: 61958
Number of successful extensions: 208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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