Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00429
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101...    31   1.4  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    30   2.5  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    29   4.3  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    29   4.3  
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427...    28   7.5  
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178           28   9.9  

>12_01_0133 -
           1011442-1011609,1011792-1011906,1012188-1012279,
           1012384-1012469,1012989-1013088,1014139-1014333
          Length = 251

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 576 FPNYNKEELFR-IIFLYQKSFVQHLLNHFDIEDETTELIEKPELF 707
           FP+ N +  +R  I     S   H L+  +IED+T E++EK E F
Sbjct: 32  FPSLNLQSYWRGYIHSSFTSLFPHRLSSPEIEDQTLEMLEKKECF 76


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 519  LIFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLLNHFDIEDETTELIEKP 698
            L F    FK    E I+ Y   + K+E   + +L  + F +    +   ED  T  +EK 
Sbjct: 1082 LTFNEHKFKNLKGETIEKYMLTFKKDEFQHLKYLLAEGFSKSFETNITFEDGATPKLEKI 1141

Query: 699  EL--FANFLN 722
             L  FAN ++
Sbjct: 1142 ILYSFANIMS 1151


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 152 NEPLPCSIFISGSMATGKTLCLQTVLNYLSY 244
           NE +  SI +SG    GKT   + ++ YL+Y
Sbjct: 145 NEGISQSILVSGESGAGKTESTKMIMRYLAY 175


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +1

Query: 256 VDCIECYSSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLR 435
           ++ IE Y SK++ E + S    E ++++ +      +   + Q       ++ D++  LR
Sbjct: 14  IEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQK------MLMDQILELR 67

Query: 436 NMDQNLLPVLLKLREFCK 489
             + NLL   + LR+ CK
Sbjct: 68  EKEMNLLKENMVLRDQCK 85


>01_01_0575 -
           4271910-4272371,4272923-4272928,4272999-4273174,
           4274150-4275299
          Length = 597

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 522 IFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLLNHFDIEDETTELIEKPE 701
           + +N++ KFG++  ++LY P+ N+ E+     +   +  +    H D E+E  E  E PE
Sbjct: 208 VAKNWSEKFGIK--MELYAPDNNEVEMTEAPLVENATATEKKEEHVDEEEEEEE--EDPE 263


>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
          Length = 455

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 603 FRIIFLYQKSFVQHLLNHFDIED 671
           F ++FL Q+S+++ +L HF++ D
Sbjct: 262 FGLLFLSQQSYIKKVLEHFNMHD 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,210
Number of Sequences: 37544
Number of extensions: 321564
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)