Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00429
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47839| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 31 1.1
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 30 2.5
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 3.3
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13) 29 3.3
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.4
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 29 5.8
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 28 7.6
>SB_47839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 56.4 bits (130), Expect = 3e-08
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Frame = +1
Query: 283 KIMFENILSAL--NDENEDV---KCENLMDFINCLN----RLQNNYEPIVIVFDRVERLR 435
++++E+IL L ND+ D+ +CEN+ +F+ L +L E + IV D+ ERLR
Sbjct: 2 RLLYEHILYQLEDNDDGTDLFPPRCENVAEFLRLLKLKATKLNLEKETLYIVLDKAERLR 61
Query: 436 NMDQNLLPVLLKLREFCKLNICTI 507
+MD N+L L+L+E LN C I
Sbjct: 62 DMDANVLAGFLRLQELAGLNFCVI 85
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 VVCRENQLNDLFNLFGDD-NEPLPCSIFISGSMATGKTLCLQTVL 229
++CR+ ++ + + P S++ISG+ TGKT CL V+
Sbjct: 212 ILCRDTEIKAVTKFLEKHVQKKKPGSLYISGAPGTGKTACLTMVI 256
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 516 HLIFENFNFKFG--VREPIKLYFPNYNKEELFRII-FLYQKSFVQHLLNHFDIEDETTEL 686
HLIF NF K G VR +K FP KE+ R++ F Q ++ + + D EL
Sbjct: 216 HLIFHNFKSKLGDRVRNILKYLFP-VPKEDTRRVVTFANQSDYISFRHHTYKKVDGQIEL 274
Query: 687 IE 692
E
Sbjct: 275 SE 276
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 507 MVTHLIFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHL 647
+V L+F FN K+ + IKL PN N + I +Y F+ L
Sbjct: 34 IVLGLVFLAFNIKYRNKRYIKLSSPNLNNVVILGCILIYSTVFLYGL 80
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 GTSQTRTYVI-ELNNTKAVNKINYIKMDEIYSK 97
G + R Y+I E+N K VNK+++ K++E + +
Sbjct: 1674 GLERERNYLIAEINTIKEVNKVDFTKLEEQFRR 1706
>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
Length = 335
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 286 IMFENILSALNDENEDVKCENLMDFINCLN-RLQNNYEPIVIVFDRVERLRNMDQ--NLL 456
I FEN+L+ D +K +NL F+N +L NN + D + L+ +D N +
Sbjct: 40 IDFENVLALRLDFKNILKIDNLWSFVNLTTLQLDNNIIEKIEGLDMLVNLQWLDLSFNNI 99
Query: 457 PVLLKLREFCKLNICTIW 510
V+ L + KL T++
Sbjct: 100 EVIEGLDKLTKLKDLTLY 117
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 576 FPNYNKEELFRIIFLYQKSFVQHLLNHFDI-EDETTEL---IEKPELF 707
FP+Y+K EL R++ Y +H L I E +T+ + IE PE+F
Sbjct: 1918 FPDYHKAELARLVPAYAYISCKHSLQEGGIVEHDTSAICSSIEGPEMF 1965
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 170 SIFISGSMATGKTLCLQTVLNYLS 241
S+ + GS +GKT C + +L+YLS
Sbjct: 441 SVVLMGSSGSGKTTCAKHILHYLS 464
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 158 PLPCSIFISGSMATGKTLC-LQTVLNYLSYKHVLSTVSSVIRQR 286
P+ + F++G+ +GK LC +Q+ L SY + T++++ +R
Sbjct: 79 PIDLAAFLAGAWVSGKVLCPVQSFLIESSYTASILTLAAISHER 122
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 158 PLPCSIFISGSMATGKTLCLQTVLNYLSYKHVL 256
PL C I+ G ATGK + V +Y H++
Sbjct: 234 PLKCQIWSKGGPATGKKTHCKHVAERFNYTHIM 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,728
Number of Sequences: 59808
Number of extensions: 419941
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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